Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02963 ATGATGAATGGTTGTTATCCATGGCCACCAAGATCATACACATGTAGCTTTTGTAGAAAAGAATTCAAATCAGCTCAAGCACTTGGAGGTCACATGAATGTTCATAGAAGGGATAGAGCAAGGCTTAGACAATCATCACCACCAACTCATGAACCTCAACTTCAAGGTTCTTCTATGCTTAATCTTAACCTAAATAACCCTACTATCACTACTACTAACCCTAATTTATTCTCAAATTCATCTTCATCTTCTTCATCATTATCATCCTCTTCAGCAACATCTCTCAAGCCTATTACTTGCACATTACCCTTGTTTGTTTCACCTCCTTCTGAGTTTAATAGATATGTTGTTGTGGATGGTATTTTGTTGAACCCTACTTTGAGCACAAAGACCTCAGAGAAATCAAAGATGGATGGTTTTGAATGTGAAGATGATTGTAGCATGGTGAAGAAAAGTGACATTTTAAGGATGAATTTGGAGATAGGATTGCCCGGAGATTATGATAACTTGGATCTTGAGCTTCGTTTGGGTACTACTACTTACTCTAATTAG 552 0.3714 MMNGCYPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSSPPTHEPQLQGSSMLNLNLNNPTITTTNPNLFSNSSSSSSSLSSSSATSLKPITCTLPLFVSPPSEFNRYVVVDGILLNPTLSTKTSEKSKMDGFECEDDCSMVKKSDILRMNLEIGLPGDYDNLDLELRLGTTTYSN 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02963 183 SUPERFAMILY beta-beta-alpha zinc fingers 10 39 IPR036236 -
Mepo6g02963 183 Pfam C2H2-type zinc finger 13 37 - -
Mepo6g02963 183 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Mepo6g02963 183 Gene3D Classic Zinc Finger 10 61 - -
Mepo6g02963 183 SMART c2h2final6 13 35 IPR013087 -
Mepo6g02963 183 PANTHER OS07G0101800 PROTEIN 5 179 - -
Mepo6g02963 183 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 40 IPR013087 -
Mepo6g02963 183 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02963 Mepo-Chr6 41139595 41140146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02963 6 177 C2H2 Transcription Factor Family AT3G23130 39.037 5.32e-24 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g02963 zf-C2H2_6 9.9e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02963 - - gmx:100781722 183.726