Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02798 ATGGCAACTGTTGTTACTGCTGACATTTCAGCTGATGCCAACAAAATGGACTCAAAACCAAAAGCTGAATCTGAATTCAGTGTTCAGAAACTTGTTGACATGTTCACAAAGCTGAATCCTTTGGCTAAGGAATTTTTTCCTTCATCTTATTCTCCTAATCATGATCATGGCCGTCAAGGGTTTAATCTCATCACTCCTAACCATTTTCTGGTCAACACTAAGCCTTCTGCTAATGATAATAACCCAAACAATCGAAGGAGGAGAAACAATTTTACCCAAGGGAGGAGAAGGTTGAACGGAAGATCGCTAAAGGCTCAGAGAGAAGATAGTGTTAGAAGAACTGTATATGTTTCTGATATTGATCAGCATGTTACTGAGGAGCGGCTTGCAGCCTTATTCACCAATTGTGGACAAGTCATTGATTGCCGAATTTGTGGTGATCCGCATTCAGTTCTTCGTTTTGCTTTTGTCGAGTTTGCTGATGAACATGGTGCAAGGGCAGCTTTAAACCTTGGTGGTACTGTGCTTGGATACTATCCAGTGAGAGTCCTTCCTTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCCAGGTCGGATGATGAGCGGGAAATGTGTACCAGGACTGTCTATTGTACAAATATTGACAAAAAGATTTCTCAAGCTGAAGTGAAAAACTTCTTTGAATCATCCTGTGGCGAGGTTACGCGCTTGAGGCTTTTGGGGGACCAGGTGCATTCAACTCGAATTGCTTTTGTGGAATTTGCAATGGCAGAAAGTGCCATTGTTGCACTAAACTGTAGCGGCATGCTTTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACTCCAGTGAGGCCAAGGGTTGCTCGTCCTGTATCGCGTTAA 897 0.4314 MATVVTADISADANKMDSKPKAESEFSVQKLVDMFTKLNPLAKEFFPSSYSPNHDHGRQGFNLITPNHFLVNTKPSANDNNPNNRRRRNNFTQGRRRLNGRSLKAQREDSVRRTVYVSDIDQHVTEERLAALFTNCGQVIDCRICGDPHSVLRFAFVEFADEHGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCTRTVYCTNIDKKISQAEVKNFFESSCGEVTRLRLLGDQVHSTRIAFVEFAMAESAIVALNCSGMLLGTQPIRVSPSKTPVRPRVARPVSR 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02798 298 MobiDBLite consensus disorder prediction 72 105 - -
Mepo6g02798 298 SMART rrm1_1 211 282 IPR000504 GO:0003723
Mepo6g02798 298 SMART rrm1_1 114 184 IPR000504 GO:0003723
Mepo6g02798 298 Gene3D - 198 291 IPR012677 -
Mepo6g02798 298 Gene3D - 71 189 IPR012677 -
Mepo6g02798 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 286 IPR000504 GO:0003723
Mepo6g02798 298 Pfam Ataxin-2 C-terminal region 34 49 IPR009818 -
Mepo6g02798 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 115 177 IPR000504 GO:0003723
Mepo6g02798 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 279 IPR000504 GO:0003723
Mepo6g02798 298 CDD RRM1_CID8_like 111 190 IPR034823 -
Mepo6g02798 298 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 34 292 - -
Mepo6g02798 298 FunFam Polyadenylate-binding protein-interacting protein 11 78 190 - -
Mepo6g02798 298 FunFam Polyadenylate-binding protein-interacting protein 10 204 282 - -
Mepo6g02798 298 MobiDBLite consensus disorder prediction 72 88 - -
Mepo6g02798 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 113 188 IPR000504 GO:0003723
Mepo6g02798 298 SUPERFAMILY RNA-binding domain, RBD 77 189 IPR035979 GO:0003676
Mepo6g02798 298 SUPERFAMILY RNA-binding domain, RBD 200 291 IPR035979 GO:0003676
Mepo6g02798 298 CDD RRM2_CID8_like 206 287 IPR034825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02798 Mepo-Chr6 38361762 38367681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02798 110 267 Eukaryotic Initiation Factors Gene Family AT1G34140 26.087 3.71e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02798 - - gmx:100779109 499.204