Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02642 ATGGGAAAAGGAAGAGCACCATGTTGTGATAAGAGTCAAGTTAAGAGAGGACCTTGGAGCCCTGCTGAAGATCTCAAACTTATAGCTTTTGTTCAGAAATTTGGTCATGAAAATTGGAGAGCTCTCCCTAAACAAGCAGGTCTTCAACGATGTGGGAAAAGTTGTCGTTTGAGATGGATTAATTATCTTAGGCCTGATTTGAAGAGAGGCAATTTTACAGTAGAGGAAGAGGAAACCATAATAAAGCTACATAAAACCTTGGGAAACAAATGGTCAAAGATTGCATCTTATTTTCCTGGTAGAACTGATAATGAGATCAAGAATGTGTGGAACACACATTTAAAGAAAAAACTTGTTGTCAAAAAATCAGACTCAAGTGGAGATGAATCCAAATTAGAATCATCAATAACCTCACCCTCTTCATCAGAATCATTTTTGTCAAATGAGGTACCAATGAAAGATTCTGAAAAACAAGTATCCAACAATGAATTTGTTATAATCAATGAGGATCCAAAAGGGTCATCAAATTCATTATCATCTTCAATTGAGTCCAATACTATCTTGAACTCAAGCCAAATTGTTAACAACAATAATTTAGAACAAGAATTGGCTTCTTTAGGGTTTTATGATGATGTTGACAATATATTAGAAGATGTGGATGATCCAAACAATTTGATTGAAATACCATGGGAATCAGATTATGATCTTTGGAATTTTATTGACAACATTGGAACTTATCAATCAAATGTTGGTGAAGAGACTGTTCAAGATGTTGTTGAAGCAAAAAATTGGTCATCACATGATGAATTTGAGAATGAGTTTGGAGTAGTAGGTGAAACAAAGGAGTCAAACAACAAAGATGAGGTCCTACCAAAGAATTATGAAGTTCAACCAGAAATTGACCCTCATGAGGCATTTGATTTCAATGATATTATAATGTCTGATTCTGAATTAGATTTTGGTAATATTCAATTGTGGCCCTCTTTGCCTCAAAATGGTATTCCAAAAGTTTAA 1014 0.3412 MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFVQKFGHENWRALPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTVEEEETIIKLHKTLGNKWSKIASYFPGRTDNEIKNVWNTHLKKKLVVKKSDSSGDESKLESSITSPSSSESFLSNEVPMKDSEKQVSNNEFVIINEDPKGSSNSLSSSIESNTILNSSQIVNNNNLEQELASLGFYDDVDNILEDVDDPNNLIEIPWESDYDLWNFIDNIGTYQSNVGEETVQDVVEAKNWSSHDEFENEFGVVGETKESNNKDEVLPKNYEVQPEIDPHEAFDFNDIIMSDSELDFGNIQLWPSLPQNGIPKV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02642 337 CDD SANT 71 113 IPR001005 -
Mepo6g02642 337 FunFam Transcription factor RAX3 9 69 - -
Mepo6g02642 337 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Mepo6g02642 337 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Mepo6g02642 337 SMART sant 68 116 IPR001005 -
Mepo6g02642 337 SMART sant 15 65 IPR001005 -
Mepo6g02642 337 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mepo6g02642 337 MobiDBLite consensus disorder prediction 130 157 - -
Mepo6g02642 337 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 244 - -
Mepo6g02642 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Mepo6g02642 337 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Mepo6g02642 337 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Mepo6g02642 337 CDD SANT 18 63 IPR001005 -
Mepo6g02642 337 Gene3D - 71 140 - -
Mepo6g02642 337 Gene3D - 16 68 - -
Mepo6g02642 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mepo6g02642 337 MobiDBLite consensus disorder prediction 125 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02642 Mepo-Chr6 36445941 36449578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02642 1 296 MYB Transcription Factor Family AT1G79180 43.895 7.69e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo6g02642 Myb_DNA-binding 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02642 K09422 - gmx:100101836 406.371