Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02616 ATGGATAATTCGGATCAGACTCAACAGCAGCAACAGTCTGCGTTCGGAGTCGCACCAGGTAATAGCCAAATGGTCTATTCTTCTCCCTACCAGACTGTTCCCATGTTGGCTTCTGGCACACCTGCCGTAGCTGTTCCTACCCCAACACAGCCTCCAACTGCCTTCTCTAATTCTGCCCACCAATTCGCATACCAGCAAGCACAGCATTTCCACCATCAACAGCAGCAACACCAACATCAGCAGCTTCAAATGTTCTGGGCAAACCAAATGCAAGAAATTGAGCAAACATTCGACTTTAAAAACCATACTCTCCCACTTGCGCGTATAAAGAAAATAATGAAAGCCGATGAAGATGTCCGGATGATTTCAGCAGAAGCTCCAGTCGTATTTGCAAAAGCATGCGAAATGTTTATATTAGAGTTGACTTTACGATCTTGGATCCACACTGAAGAGAACAAGAGGAGAACACTACAAAAGAATGATGTAGCAGCGGCTATTGCAAGAAATGATGTTTTTGATTTCTTGGTTGATATCATTCCAAGAGATGAATTGAAAGAAGATGGGCTTGGAATGGCAAAGCCTACTATTCCGATAATCGGTGCTCCAGCTGATATGCCATATTATTATGTCCCACCACAACATCCTTTAGGTCCTACAGGGATGATCATGGGAAACCCAGTTGATCATGCAGCCCTATATTCTAACCAGCAGCCTCGACCTCCTGTGGCTTTCATGCCATGGTCAAATGCACACATTCAGCAACAGCAGCCACCACAACAGGAACAAACAGACTCTTGA 798 0.4474 MDNSDQTQQQQQSAFGVAPGNSQMVYSSPYQTVPMLASGTPAVAVPTPTQPPTAFSNSAHQFAYQQAQHFHHQQQQHQHQQLQMFWANQMQEIEQTFDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEMFILELTLRSWIHTEENKRRTLQKNDVAAAIARNDVFDFLVDIIPRDELKEDGLGMAKPTIPIIGAPADMPYYYVPPQHPLGPTGMIMGNPVDHAALYSNQQPRPPVAFMPWSNAHIQQQQPPQQEQTDS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02616 265 FunFam Nuclear transcription factor Y subunit gamma 68 181 - -
Mepo6g02616 265 Gene3D Histone, subunit A 64 181 IPR009072 GO:0046982
Mepo6g02616 265 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Mepo6g02616 265 MobiDBLite consensus disorder prediction 1 20 - -
Mepo6g02616 265 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 61 248 - -
Mepo6g02616 265 SUPERFAMILY Histone-fold 58 175 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02616 Mepo-Chr6 36066753 36069455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02616 82 210 CCAAT-HAP5 Transcription Factor Family AT1G56170 85.385 1.25e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Mepo6g02616 CBFD_NFYB_HMF 5.8e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02616 K08066 - cave:132175957 363.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g02616 6 36066753 36069455 Mepo6g02616 6 36066753 36069455 ECH