Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02607 ATGGAGCAACCACAACACCTCGTAGACCAAAATTTCCCACTCTTCAAACCATCTCGTAAACCCTCCATAAACCCTTCACTTCCCATTTCCAATAAACCTCAAAACGACGTCGTTACCCACGAAACCCTAAATTCCAACCCCGAAAACACCACCGCCACATTCTCCGATCTCGGCCTCTCCGAATGGGCGGTAAAAACCTGCAAAGAACTCGGAATGAAAACTCCACGGCGCGTGCAACAACACTGCATCCCTCAGATTCTAGCTGGCCGTCACGTAATCGGTATCGATGAAACCGGAAGTGGTAAAACGGCGGCATTTGCGCTTCCGATTCTTCAGCGGCTTGCTGAACATACGTTTGGTGTGTTTGCGCTTGTGGTGACGCCCACGCGCGAGCTTGCGTTTCAGTTGGCGGAGCAGTTTAGGGCGCTTGGTTCGTCGCTTCGGCTTCGGATTGCGGTGGTTGTTGGTGGTATGGATATGCTTAGACAGACTAAAGAGTTGGTTGCTAGGCCGCATCTTGTTATTGCTACTCCTGGGAGGATTAAGGTTTTGCTTAAGGATAATCCCGAAATTGCTCCAGTTTTCGCTAGGACTAAGTTTCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTGGTTTTCAGGATGAATTGAAATTTATATTTCAGTGCTTACCAGAAAACCGGCAAAACCTATTTTTTTCAGCAACAACAACTAGTAATTTACAAAAGTTGCGTGAGCGTTATCAAGATAAGTTGTATGCCTTTGAAGCTTATGAAGGGTTTAAGACGGTTGAAAATCTTAAGCAACAGGTTGTATTCATCCCTAAAAATGTGAAGGATGTATATTTGTTGCATATCTTGTCTAAAATGGAAGATATGGGTATTAGGTCTGCCATCGTCTTTGTCTCCACATGCAGAGATTGTCATCGTTTAAATTTAATGCTTGAAGTGCTCGATCAAGAAGCTGCTGCTCTATATTCATTCAGATCACAGGCTCAGAGGCTTGAAGCACTTCATGACTTTAAATCAGGGAAGGTTCCTGTATTACTAGCAACTGATGTTGCTGGCCGTGGTCTGGATATACCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCAAGAGATTATATCCATCGTGTTGGTCGTACTGCAAGAGCAGGTAGAGGGGGACTTGCTTTGAGCCTTGTTACCCAGAATGATGTAGATCTCATTCGAGAAATAGAGACCCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTTGCAAAAATGAAGATGATGGATGATGGGTTTGAAGAGAAAGCGAAAGAGCGGAAAAAACAGAAACTGAAAATGCTAGAAGAGAAAGGATTATTGAAGCAAAGAAGTAAGAGAAAAAGAAATAAAGAATTTCCAAAGGGAAATAAACAGGAAAAAGTGAAATTGGATGCATCAGCAGATGTAACATCACTAAAGAAAAGGAGTAAAAAGAGAGAATAA 1542 0.4228 MEQPQHLVDQNFPLFKPSRKPSINPSLPISNKPQNDVVTHETLNSNPENTTATFSDLGLSEWAVKTCKELGMKTPRRVQQHCIPQILAGRHVIGIDETGSGKTAAFALPILQRLAEHTFGVFALVVTPTRELAFQLAEQFRALGSSLRLRIAVVVGGMDMLRQTKELVARPHLVIATPGRIKVLLKDNPEIAPVFARTKFLVLDEADRVLDVGFQDELKFIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAFEAYEGFKTVENLKQQVVFIPKNVKDVYLLHILSKMEDMGIRSAIVFVSTCRDCHRLNLMLEVLDQEAAALYSFRSQAQRLEALHDFKSGKVPVLLATDVAGRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLALSLVTQNDVDLIREIETLIERQLEMIEYKENEVLSLMKKVFSAKNVAKMKMMDDGFEEKAKERKKQKLKMLEEKGLLKQRSKRKRNKEFPKGNKQEKVKLDASADVTSLKKRSKKRE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02607 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 83 256 IPR014001 -
Mepo6g02607 513 MobiDBLite consensus disorder prediction 485 507 - -
Mepo6g02607 513 Gene3D - 29 255 IPR027417 -
Mepo6g02607 513 CDD DEADc_DDX49 54 257 - -
Mepo6g02607 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 411 IPR027417 -
Mepo6g02607 513 Pfam Helicase conserved C-terminal domain 284 391 IPR001650 -
Mepo6g02607 513 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 45 495 - -
Mepo6g02607 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Mepo6g02607 513 MobiDBLite consensus disorder prediction 453 475 - -
Mepo6g02607 513 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 52 80 IPR014014 GO:0003724
Mepo6g02607 513 MobiDBLite consensus disorder prediction 1 33 - -
Mepo6g02607 513 SMART ultradead3 71 271 IPR014001 -
Mepo6g02607 513 CDD SF2_C_DEAD 268 400 - -
Mepo6g02607 513 Pfam DEAD/DEAH box helicase 77 245 IPR011545 GO:0003676|GO:0005524
Mepo6g02607 513 Gene3D - 263 510 IPR027417 -
Mepo6g02607 513 SMART helicmild6 310 391 IPR001650 -
Mepo6g02607 513 MobiDBLite consensus disorder prediction 453 513 - -
Mepo6g02607 513 Coils Coil 408 428 - -
Mepo6g02607 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 283 430 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02607 Mepo-Chr6 35943323 35950066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02607 45 404 Eukaryotic Initiation Factors Gene Family AT3G13920 33.795 3.40e-55 189