Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02588 ATGGATGCTGGTAGTGCTTCTATTGCTCCTCATAAGGGAAGACAAACTAATCGACTTACTATAAGGGATATTGCGTCAATGCCACTGCGTATCCCTCCAATCAATCAAGTAGGACAACATGACAATACAAGAAGCATGTCAGCACCCAATATAAATGGAAGTTCATTAGAGAGTGAACATCATGGCACTAATGGTAATAGAAATGGTGTTAGGGTTATTCGTCCTCAACCTATCCGCCCACAACTCCATAACTATCGTCATCCAACAATTGCAACACATCTAGTTCCATCTAATCCTCCAGGTGGTGCTACAATCCATGAACAATCAGGTCTTCGGGTTTCTAATGGAGTCATGATCAACACAACTCTCGGCCGTCGAAGTGTTAATCCCTTTCGCTATGTTCGAGAAAATGATGTTTCTTCAATCGAGGAAATAGAAAATTTGGTTGACCAACATCGAGACATGCACTTCGACATTAACGAGATGCCATGTGAGGAAGCTATTGCATATCTTGAAAGGATTTGTGTTGCAAACACTGGTTTATCAAAGGAAATAATTGAGAGTCAGTTGAAGACAAAAGTTTATTCACCAAGTCCAGTTGCTACTAATTTGGAGGAGTCACCTTCCAATGATCAAGAAACTGATTCCTGCGTAATATGTCAGGACCAATTCAAAAATGGAGAAAATATTGGAATTATTCAATGTGTTCATGAATATCATTTTGATTGCATAGCAGAATGGTTGCTTTTGAAGAATAGCTGCCCCATGTGCAATTTAGAAGCTCTGACTTTAGAAAAGAATGCATAG 807 0.3941 MDAGSASIAPHKGRQTNRLTIRDIASMPLRIPPINQVGQHDNTRSMSAPNINGSSLESEHHGTNGNRNGVRVIRPQPIRPQLHNYRHPTIATHLVPSNPPGGATIHEQSGLRVSNGVMINTTLGRRSVNPFRYVRENDVSSIEEIENLVDQHRDMHFDINEMPCEEAIAYLERICVANTGLSKEIIESQLKTKVYSPSPVATNLEESPSNDQETDSCVICQDQFKNGENIGIIQCVHEYHFDCIAEWLLLKNSCPMCNLEALTLEKNA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02588 268 ProSiteProfiles Zinc finger RING-type profile. 217 258 IPR001841 -
Mepo6g02588 268 MobiDBLite consensus disorder prediction 36 65 - -
Mepo6g02588 268 SUPERFAMILY RING/U-box 210 262 - -
Mepo6g02588 268 SMART ring_2 217 257 IPR001841 -
Mepo6g02588 268 MobiDBLite consensus disorder prediction 1 71 - -
Mepo6g02588 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 262 IPR013083 -
Mepo6g02588 268 Pfam Ring finger domain 215 258 IPR001841 -
Mepo6g02588 268 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 39 262 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02588 Mepo-Chr6 35686932 35689271 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02588 143 262 C3H Transcription Factor Family AT2G15530 39.669 5.17e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02588 K19041 - gmx:100800642 196.052