Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02553 ATGGCTCCAATGACTCTACCACCTGGATTCAGGTTCCACCCTACAGATGAAGAACTTGTTGCTTACTACTTAGAAAGAAAAATAACAGGAAGAACTATAGAGCTTGATATAATTGCAGAAGTTGATCTCTACAAATGTGAACCTTGGGATTTACCAGAAAGATCATTTCTTCCTAGCAAGGATATGGAGTGGTATTTTTATAGTCCAAGAGATAGAAAGTATCCAAATGGGTCAAGAACAAATAGAGCAACAAGAGGTGGTTATTGGAAAGCAACTGGAAAAGATAGGGCAGTGAACTCTCAAAAGAGACAAGTTGGAATGAAGAAGACACTTGTTTATTACAAAGGTAGAGCACCTCATGGGATTAGAACCAATTGGGTTATGCATGAATATCGACTTATTGAATCACATCCTGGTGCTTCTCTCTCTTCTTTGAAGGATTCATATTCATTGTGTCGAATTTTCAAGAAGACAATTCAAATCCCAACAAAAACTAATGAAGAAGAACAAGTTAAGGATACAAAGAAGGAAATGATGGTCTTCGAAGAACAAGTGCAAGAGGAAGACTCAAGTGGTGGCACTGAGATTTCAAGAGAAATAATGCAAACTATGGATGAAAAAGTTCTTAATCATGATGAACATCCAAAATTTCTATGTGATGCTTCTTCATCTGATGTCACTCAAGGAACATGTACACCAACAGATACATGTAATAATATACCGACTGAGGATTTTCATGCACAATTTGCCTATGAAGAAGAAAATAGTTCAGCTATTTCTTATCCAATGGGAATAAGCTACCCCTCAAATTTATTTCAGGATATAGAAATACCTATGTATGGTGGCTTCTATAATCAATTCCCGCAAACACCTTTAATGATGGAAGATTTCTCACAAATGGAGACAAAATCGATAATGAAGCCTAATATAACTGATGACTGCTTTTTGTATGACAAATACAGAGACTGTATGAATGGAACACTAGAAGAAATCATATCTTTATGTTCCTCTCAAGATCATTCTGTGGCTTTTCCTATGCCATAG 1044 0.3611 MAPMTLPPGFRFHPTDEELVAYYLERKITGRTIELDIIAEVDLYKCEPWDLPERSFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVNSQKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRLIESHPGASLSSLKDSYSLCRIFKKTIQIPTKTNEEEQVKDTKKEMMVFEEQVQEEDSSGGTEISREIMQTMDEKVLNHDEHPKFLCDASSSDVTQGTCTPTDTCNNIPTEDFHAQFAYEEENSSAISYPMGISYPSNLFQDIEIPMYGGFYNQFPQTPLMMEDFSQMETKSIMKPNITDDCFLYDKYRDCMNGTLEEIISLCSSQDHSVAFPMP 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02553 347 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Mepo6g02553 347 Coils Coil 164 184 - -
Mepo6g02553 347 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 220 - -
Mepo6g02553 347 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Mepo6g02553 347 FunFam Nac domain-containing protein 86 15 160 - -
Mepo6g02553 347 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Mepo6g02553 347 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02553 Mepo-Chr6 34983620 34987428 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02553 1 333 NAC Transcription Factor Family AT1G54330 49.701 8.48e-97 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo6g02553 NAM 6.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02553 - - gmx:100808325 545.814