Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02539 ATGCATCGTCAACCGCAACCACCACCACCTTCCACCGCACGCGCGCGTTGCGCCGGTTGCCGGACCTACTTCTCCGCCGCTCAAGGTGTGGCGGAGTTACCTTGTCCGAATTGTCAAATGCCACATGTGTTCTTCGTTGATTCTTCCGCTGTGAAGATTCGTTGTTCTTCGTGTAAGGCGGTTGTGAATGCTCCGAGTAACCTTGCGAAGTTTCCGTGTCCGCAGTGTCATGTGAGGATTGATGTTCATGCTGATGTTGAAGAAGTTAACGAGCTTGTTAATGAAGTGGAGCAAGAAGAAGGCGATGGAGGTATTGCCGGAGAAACATTTACAGATTATCGACCATCCAAGCTATCTATTGGATCTCCACACCCAGATCCGATTGTAGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCTACTTATGATCCAAAGATTAAGAATGATTTGGAACGTTCAAAGGCTTTGTCATGCTTGCAGATCGAGACATTGGTTTATGCTTGTCAGAGACACCTTCAACACGTTCCCAGTGGTCCTAGAGCAGGATTCTTTATTGGAGATGGAGCTGGTGTAGGTAAAGGTCGAACAGTTGCTGGGCTAATCTGGGAGAACTGGCACCATGGAAGGAGAAAAGCCTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGGAGAGATTTGGATGACATGGGTGCAAGTTGCATTGCAGTGCATGCTTTGAATAAACTGCCGTATACTAAGCTTGATACAAAGTCTGTTGGAGTCAAGGAGGGAGTTATTTTCTCGACATACAGTAGCCTCATAGCATCATCTGACAGAGGTCGTACCCGTATGCAACAACTTGTGCAGTGGTGTGGACCCGGGTTTGATGGTCTTATAATATTTGATGAGTGTCATAAAGCAAAAAATTTGGTTCCCGAAAAGGATAAGAAGCCAACGAAAACTGGTCAAGCAGTACTTGATATACAGGCACAACTACCTGAAGCTCGGGTTGTTTATTGCTCAGCTACTGGTGCATCTGAACCTCGCAATATGGCTTATATGGTTCGTCTTGGCCTTTGGGGAGCTGGGACTTATTTCCCTGATTTTGGTGAATTTCTAGGTAGTGCTCTCAACAATGGGGGTGTTGGAGCTCTAGAACTAGTTGCAATGGACTTGAAAGCAAGGGGGATGTATTTATGTCGCACACTTAGCTACAAGGGTGCTGAGTTTGAAATTATTGATGCACCATTAGATGATAGAATGATGCATGCGTATAAAAAGGCTACAGAAGTTTGGTTGGATTTGCGTAAGAAGTTGCAGTCTGTCATTGAGTTAATATCTGACAAAATTAATACCAGACAACTATGGCGATCATATTGGGCAAGCCACCAGAGATTCTTCAGACATATGTGTATGTCTGCTAAAGTTCCTACTGCAGTGAGACTGGTGAACCAAGCATTAATGGAAGACAAGTGTGTAGTCATAGGTCTTCAGAGTACGGGGGAAGCAAGGACGGAGGAAGCTGTTTCAAAATACGGCTCTGAATTTGATGACTTTATTTCTGGACCTCGTGAGTTGCTGCTAAAATTTGTTGAAGACAATTTCCCATTGCCACAAAAGCCTGAACTTCTCCCCGAAGATGACGGAGTAAAGGAGCTTCAAAGGAAGAGGCACTTGGCAAGTCCTGACGTTTCAGGAAAATCTCGAGTCAGAAAAGTAGCCAAGCGGCAGCCGCCTAGTGATTCTGAAAGTGATGAAGAATCTGAAACTGCCTCTGTTCCCGAATCTTCTGATTCTGATTACGGACCAGAAGAGAATGAAAGTGCTGCCTCTGGTCTTGAATCTTCCGACTCTGATTATGAGGAGTTTCAGAAATGTGAAATTTGCGGCACTGAAGAGGAAAGGGAAAACTTGTTGCAGTGTTCCCACTGTGGAAAATACACTCATCACTCATGCTTGGTGCCATCAATTAGCGATTTTGTTCTTGAGGAATGGGCATGTGATTTGTGCAAGGATACGACCGTAAACTATCTCCCTCCTGGAACAGATATAATTGAACTCCAGAAAAGCTATGACACAGCCATGGAGTGCAAGAAAAATATATTAGAGATGATTTGTGCTTTGGATCTTCCAAACAATCCCTTGGATGATATTATTGATCAGTTAGGAGGCCATGACAAAGTTGCAGAAATTACAGGAAGGAAAGGAATGCTTGTGAGGGCCCCTAGTGGAACGGGTGTGTTTTATCAGACTCGAAATACAAAAGATGTCACTGCCGAGATGGTCAACATGAATGAGAAAAAGCTCTTTATGGAAGGTAAGAAGTTAGTGGCCATCATCTCTGAAGCTGGATCAGCTGGCGTTTCGTTGCAGGCAGACCGAAGAGTGATAAATCAGAAAAGAAGGGTTCACTTGACTCTTGAACTTCCATGGAGTGCCGACCGAGCAATTCAGCAGTTTGGAAGAACTCATAGATCCAATCAAGTTTCAGCACCAGAATACAGGTTACTATTTTCAAACCTTGGTGGAGAACGCCGGTTTGCATCAGCTGTTGCTAAGAGATTAGAATCCCTTGGAGCTTTGACTCAGGGAGATCGTAGAGCAGGGCCTTCGTTAAGTGCATATAATTATGATAGTCCTTATGGGAAGAGAGCACTGATGCTTTTGTACAATGGAATACTGGAGCGGGATCCCCTTCCTGTTGTACCTCCTGGATGCTTATCTGACAGACCAGATACAATCAAAGATTTTATTATGCAGGCAAAAGCTGCTCTTCTTTCCGTTGGAATTTTTAAGGACGACGGCCTTGGAGATGATGATATGAATTGCTACATTGATGATAAAAATGATATACACAATCTTGGACGATTTCTCAACCGGATTTTAGGAATAGCTCCTGAAACTCAGAATAGGCTATTTGAGTTATTTGTGAATATCTTGGATCTTCTTGTTAATAAAGCTCGAATTGAAGGTAACCTTGATACAGGCATTGTTGACTTGAAAGCTAATGTCATTGAACTGCAAGGGACTCCAAAGACAGTCTATGTTGATCAAATGAGCGGGGCTTCAACTATTCTGTTCACATTCACCTTGGATCGCGGGGTTTCATGGGAGTTGGCAAATACCATGCTGAATGAGAAGCAGAAGGTTGGATTTTGTTCAACTGGTGATGGCTTCTATAAGTCCAAGAGGGAGTGGTTGGGAAAACGTCATGTTATTTTAGCATTTGAAAGTTCGGCTCCATCTATGTATAAGATAGTTCGTCCTCCTACCGGAGAATCAACTCGGGATATGCATCTGCTAGAATTAACTAGAAAATATTCAAAAGTTTCATCTTTAAAGGAGGCCCAAATTGGTTGGGAAACCGAATATGAAGCTTCATTTAAACAGTGCATGCATGGTCCCAATTGTAAGGTTGGTAAGTTCTGTTCAGTTGGCTCAAGAATACAGCAAGTAAATGTCTTAGGTGGTGTTATTCTTCCTGTTTGGGGAAACATAGATAAGGCGCTCTCTAAGCAGGCCCGAAACATGCATAAGAGGCTACGCATTGTTCGTGTTGAAACTACATCAGATAACAGACATATAGTAGGGCTTCTTGTTCCTAATGCAGCAGTTGAAACTGTGCTTCAAGGTTTATCATACGTTATAGAACTGGATGATTGA 3657 0.4345 MHRQPQPPPPSTARARCAGCRTYFSAAQGVAELPCPNCQMPHVFFVDSSAVKIRCSSCKAVVNAPSNLAKFPCPQCHVRIDVHADVEEVNELVNEVEQEEGDGGIAGETFTDYRPSKLSIGSPHPDPIVETSSLSAVQPPEPTYDPKIKNDLERSKALSCLQIETLVYACQRHLQHVPSGPRAGFFIGDGAGVGKGRTVAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDMGASCIAVHALNKLPYTKLDTKSVGVKEGVIFSTYSSLIASSDRGRTRMQQLVQWCGPGFDGLIIFDECHKAKNLVPEKDKKPTKTGQAVLDIQAQLPEARVVYCSATGASEPRNMAYMVRLGLWGAGTYFPDFGEFLGSALNNGGVGALELVAMDLKARGMYLCRTLSYKGAEFEIIDAPLDDRMMHAYKKATEVWLDLRKKLQSVIELISDKINTRQLWRSYWASHQRFFRHMCMSAKVPTAVRLVNQALMEDKCVVIGLQSTGEARTEEAVSKYGSEFDDFISGPRELLLKFVEDNFPLPQKPELLPEDDGVKELQRKRHLASPDVSGKSRVRKVAKRQPPSDSESDEESETASVPESSDSDYGPEENESAASGLESSDSDYEEFQKCEICGTEEERENLLQCSHCGKYTHHSCLVPSISDFVLEEWACDLCKDTTVNYLPPGTDIIELQKSYDTAMECKKNILEMICALDLPNNPLDDIIDQLGGHDKVAEITGRKGMLVRAPSGTGVFYQTRNTKDVTAEMVNMNEKKLFMEGKKLVAIISEAGSAGVSLQADRRVINQKRRVHLTLELPWSADRAIQQFGRTHRSNQVSAPEYRLLFSNLGGERRFASAVAKRLESLGALTQGDRRAGPSLSAYNYDSPYGKRALMLLYNGILERDPLPVVPPGCLSDRPDTIKDFIMQAKAALLSVGIFKDDGLGDDDMNCYIDDKNDIHNLGRFLNRILGIAPETQNRLFELFVNILDLLVNKARIEGNLDTGIVDLKANVIELQGTPKTVYVDQMSGASTILFTFTLDRGVSWELANTMLNEKQKVGFCSTGDGFYKSKREWLGKRHVILAFESSAPSMYKIVRPPTGESTRDMHLLELTRKYSKVSSLKEAQIGWETEYEASFKQCMHGPNCKVGKFCSVGSRIQQVNVLGGVILPVWGNIDKALSKQARNMHKRLRIVRVETTSDNRHIVGLLVPNAAVETVLQGLSYVIELDD 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02539 1218 Pfam C-terminal domain on Strawberry notch homologue 711 997 IPR026937 -
Mepo6g02539 1218 SUPERFAMILY FYVE/PHD zinc finger 612 670 IPR011011 -
Mepo6g02539 1218 ProSiteProfiles Zinc finger PHD-type profile. 621 671 IPR019787 -
Mepo6g02539 1218 Gene3D - 155 354 IPR027417 -
Mepo6g02539 1218 SMART PHD_3 623 669 IPR001965 -
Mepo6g02539 1218 Pfam P-loop containing NTP hydrolase pore-1 123 424 IPR039187 -
Mepo6g02539 1218 MobiDBLite consensus disorder prediction 552 581 - -
Mepo6g02539 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 871 IPR027417 -
Mepo6g02539 1218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 567 675 IPR013083 -
Mepo6g02539 1218 PANTHER STRAWBERRY NOTCH-RELATED 64 1211 IPR026741 GO:0006355
Mepo6g02539 1218 Gene3D - 734 847 IPR027417 -
Mepo6g02539 1218 MobiDBLite consensus disorder prediction 552 616 - -
Mepo6g02539 1218 ProSitePatterns Zinc finger PHD-type signature. 624 668 IPR019786 -
Mepo6g02539 1218 FunFam Protein strawberry notch homolog 2 154 354 - -
Mepo6g02539 1218 Pfam PHD-finger 624 669 IPR019787 -
Mepo6g02539 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 366 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02539 Mepo-Chr6 34725139 34742311 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo6g02539 AAA_34 6.8e-130 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02539 K26273 - gmx:100808670 1763.81