Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02498 ATGATGCAAGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTTAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTACTTGAGGAAGAAAGTTTCTTACGAAGCCATTGATCTTGATGTTATCAGAGAAGTTGATCTCAACAGACTTGAGCCTTGGGATCTCAAAGATAAGTGTAGGATTGGATCAGGGCCACAAAACGAGTGGTATTTCTTCAGTCACAAGGACAAGAAATACCCGACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACAGGAAGAGACAAAGCCATATATCACACCAATTCCAAAAGGATTGGAATGAGGAAAACCTTAGTGTTCTACACTGGACGTGCTCCTCATGGCCACAAAACTGATTGGATCATGCATGAGTACCGTCTTGATGATGATGACAATGCAGAAGTTCAGGAAGATGGATGGGTAGTATGCAGGGTATTCAAAAAGAAAAACACAAACAGAAGCTACCAACAAGAAATTGAAGAAGAAGATCATCACATGATTAACCACATGAGATCAACAAATGGTCCAAACCATTTTCTAGAACCAAAACATCATCATCACATGCAACAACTAGGACTATATGATTACAACAATAACACCACCACCACCTTTGATGGTACAATTCATCTACCACAATTGTTCAGTCCAGAATCAGCCATAGCAGCACCACCAGCTTCCTTCCATAATTCATCCATGGACATCCTTGAATGCTCTCAAAATTTGTTGAGGCTCACAACAACAAATACTAGCTCTGGACTTAATCTCATGCAACAACAACACCAAGGAGAAAGGTTGATCAGTGGTAGTGATTGGTCATTCTTGGATAAACTACTTGCATCACACAATGGAATGGATCTTAATCTAAGGAACAAATTATGTAACACTCCTAATAATCACCAGGCTGCACCTTCTGCTGCTGTTGGAACTTCTTCAGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGTCTCATGATATTATGAAATTTTCAAAGTAA 1035 0.399 MMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDNAEVQEDGWVVCRVFKKKNTNRSYQQEIEEEDHHMINHMRSTNGPNHFLEPKHHHHMQQLGLYDYNNNTTTTFDGTIHLPQLFSPESAIAAPPASFHNSSMDILECSQNLLRLTTTNTSSGLNLMQQQHQGERLISGSDWSFLDKLLASHNGMDLNLRNKLCNTPNNHQAAPSAAVGTSSAQKFPFHYLGCESHDIMKFSK 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02498 344 ProSiteProfiles NAC domain profile. 10 160 IPR003441 GO:0003677|GO:0006355
Mepo6g02498 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 240 - -
Mepo6g02498 344 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
Mepo6g02498 344 FunFam NAC domain-containing protein 19 164 - -
Mepo6g02498 344 Gene3D NAC domain 19 165 IPR036093 GO:0003677|GO:0006355
Mepo6g02498 344 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02498 Mepo-Chr6 34064982 34068072 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02498 2 344 NAC Transcription Factor Family AT1G79580 54.005 4.40e-116 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mepo6g02498 NAM 7.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02498 - - gmx:100789606 482.641