Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02466 ATGACGACGGCGATCTCGGTGGCGGAACCCGAACTAAAAACATACTGGTGCCACGAATGTGACATGAGTGTTTCTTTAACTACTTCTCACACCCCCTCTCCTCTACTATGCCCCCATTGCGACACTCATTTCCTCGAACTCATGGACTCACCTTTTTCCCAAAACGACGTCGATTCATCCTCCCTCTTCGACGTCGTTTTCCAAGACGCGCTTTTACTACTCACACCTCCTCCCCCTAAATCCCGCACCGAAACAACAATCCCTACTATAACCGTCACACAAACGCTTCTTACCTTACTGGATCCCTCAAACGGCGTCGTTATATGCGCCGTTTGTAAAGAAACGGTTTCCGTTGACGAGGAAGCGAAACAGCTTCCGTGTGATCATCTTTATCATTCGGATTGTATTACTCCGTGGCTTCGGATTCGACCTTCTTGTCCTCTTTGTCGGTGCGGAATTGCGGAGGATGAAGAGGATGAGAATGATGAGGAAGATGATGTTAATGGTGGAGATGTGATGAGAGAGATGGTGATGCGGTTGTCGGAGTTGTCTGAGGATGATTTTTATGGATTGAGGATTACTCTTAATCACATTGCTTCACGTCATGCTCTGCTTCATTCTGATACTTCTGGTGGTGGTGAGAATAGCGATGATGCTAGTGAACTTGATGTTGGTGCTGATGTAGATGGAGAAGAATCTTAA 702 0.4672 MTTAISVAEPELKTYWCHECDMSVSLTTSHTPSPLLCPHCDTHFLELMDSPFSQNDVDSSSLFDVVFQDALLLLTPPPPKSRTETTIPTITVTQTLLTLLDPSNGVVICAVCKETVSVDEEAKQLPCDHLYHSDCITPWLRIRPSCPLCRCGIAEDEEDENDEEDDVNGGDVMREMVMRLSELSEDDFYGLRITLNHIASRHALLHSDTSGGGENSDDASELDVGADVDGEES 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02466 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 168 IPR013083 -
Mepo6g02466 233 SMART ring_2 109 149 IPR001841 -
Mepo6g02466 233 Pfam zinc-ribbon 14 48 IPR039525 GO:0061630
Mepo6g02466 233 MobiDBLite consensus disorder prediction 207 233 - -
Mepo6g02466 233 ProSiteProfiles Zinc finger RING-type profile. 109 150 IPR001841 -
Mepo6g02466 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 151 - -
Mepo6g02466 233 Pfam Ring finger domain 109 150 IPR001841 -
Mepo6g02466 233 SUPERFAMILY RING/U-box 102 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02466 Mepo-Chr6 33733682 33738006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02466 8 69 C3H Transcription Factor Family AT3G60080 50.000 4.03e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02466 K11982 - gmx:100782164 236.113