Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo6g02446 | ATGGAGCTTGGTTTGAGTGAAAAGCCTGAGGACCGAATAGAAGAGCGAATGAAACAAATTGAAGCCATTTTCAAAGCTAAACAGAATCAGAAGTGGCAACAGTGTCACAATCCAATTCAGATAACTAATTTTGAAGGAGAGTTGTTAACAAAAGCTGATAATGTTCAAGATGATGAAAGCTGGATGAATATGGAAGAGGTTGAAGTAGCAACTTTGGAATGCGAGAAGACATGCAAAAGGAAGGCTCCCTGTTTAGTTGCCAATGCGTTGGGGATGGTGACATCCGTGAACGGCATTGGGGGCCGTACTAGAAACTTCTTTGATTGTAATATATGTTTGGATACGGCAAATAATCCTATTTTGACATGCTGTGGTCACTTGTTTTGTTGGGAATGCTTCTATCAATTGGCATATGCTTATTCAAATGCTAAAGAGTGTCCTGTTTGTGAAGGAGAAGTCCTTGACACCGACATCATCCCAGTTTATGGAAATGGAATGATCGATGATATTAGCCGGTTGGAGTTGAAAGAAACTTGTTTGAGAGTTCCTGATCGACCTCATGCACCTAGAGTTGAAAGTACTAGGCAGCGGCGCAGACAACGCACCGTCGCTTCTACAAACCAGGATTTGTCGTTGTTTGGTAACTTTGGTGGATTAGAAGAGCCAGATCCAATGCAATTTTCGATTATTTCAACCGATGGAGCTATGTTTTAG | 714 | 0.4146 | MELGLSEKPEDRIEERMKQIEAIFKAKQNQKWQQCHNPIQITNFEGELLTKADNVQDDESWMNMEEVEVATLECEKTCKRKAPCLVANALGMVTSVNGIGGRTRNFFDCNICLDTANNPILTCCGHLFCWECFYQLAYAYSNAKECPVCEGEVLDTDIIPVYGNGMIDDISRLELKETCLRVPDRPHAPRVESTRQRRRQRTVASTNQDLSLFGNFGGLEEPDPMQFSIISTDGAMF | 237 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo6g02446 | 237 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 100 | 163 | IPR013083 | - | |
| Mepo6g02446 | 237 | ProSiteProfiles | Zinc finger RING-type profile. | 109 | 150 | IPR001841 | - | |
| Mepo6g02446 | 237 | SMART | ring_2 | 109 | 149 | IPR001841 | - | |
| Mepo6g02446 | 237 | SUPERFAMILY | RING/U-box | 103 | 159 | - | - | |
| Mepo6g02446 | 237 | Pfam | Zinc finger, C3HC4 type (RING finger) | 108 | 153 | - | - | |
| Mepo6g02446 | 237 | MobiDBLite | consensus disorder prediction | 185 | 199 | - | - | |
| Mepo6g02446 | 237 | MobiDBLite | consensus disorder prediction | 185 | 204 | - | - | |
| Mepo6g02446 | 237 | Coils | Coil | 10 | 30 | - | - | |
| Mepo6g02446 | 237 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED | 58 | 201 | IPR045103 | GO:0005783|GO:0006511|GO:0061630 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo6g02446 | Mepo-Chr6 | 33490152 | 33492037 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo6g02446 | 76 | 195 | C3H Transcription Factor Family | AT3G58030 | 46.281 | 1.85e-29 | 112 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo6g02446 | - | - | cam:101495597 | 307.76 |