Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02440 ATGGAGCTAGGTTTAAGCTTAGGAAACTCTTCAAAGCCTCTAATTGGATTAATGGAAAAGCATCCTCATCAAACTTCCAAGGAACTTGGCTTAGGCTTCAACACCACTTTATCAATCGGTCCAATTATTAATACTACACAAAGAGATCAACTTCATCAACAACAAGAAGAAAAGACTCAAAGGGACATCAACAACAACAGTAACAGAACTGAAAATCCTAATCATGTATTGCATCAACTTGATCTTCTTCCTCAACTCTCATTCCCATGGAATAATCCTTCTCAAAACGGTAATTTATTATCAACCGAGTTTGGAGGTTCTTCAACGGGATTGGATGTGAACGTGGTTCCACCGGCAACGGTAGTTGTTATGGCGGACAATGAAATTGCGCTTTCATCATCCCCTAATAGTGTAGCATCTTCTTTTCAGATGGATCTATGCATGTACAGTCGAGGAGGAAGTGGTGGTAGGAGTTTGAGTGGTTCAGGAGGGAACAAGAGAGAGTTTTCTGATGGTGAAGGCTATGATCAAAGGAATTCTTCAAGAGTTAGTGATGAAGATGATAACTGTGATGTTGGTAACACAAGGAAGAAACTTAGGCTCTCTAAGGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACATCACACTCTTAACCCTAAACAAAAACTGGCTCTTGCAAAACAACTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGTTCCAAAACAGAAGAGCAAGGACTAAGTTGAAGCAAACAGAAGTAGATTGTGAATATTTAAAGAGATGCTGTGAAACATTGACAGAAGAGAATAGGAGGCTACACAAGGAACTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTCAACATGCAATTACCAGCAACTACTTTAACTATGTGCCCTTCTTGCGAACGTGTTGCAACAAATTCTACGGCCACTTCATCTGTCACTAATACTAGTGCCACAATCAATGCTAGTAACAATAACAAAATTAACCAGTGA 1011 0.3917 MELGLSLGNSSKPLIGLMEKHPHQTSKELGLGFNTTLSIGPIINTTQRDQLHQQQEEKTQRDINNNSNRTENPNHVLHQLDLLPQLSFPWNNPSQNGNLLSTEFGGSSTGLDVNVVPPATVVVMADNEIALSSSPNSVASSFQMDLCMYSRGGSGGRSLSGSGGNKREFSDGEGYDQRNSSRVSDEDDNCDVGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSVTNTSATINASNNNKINQ 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02440 336 MobiDBLite consensus disorder prediction 153 191 - -
Mepo6g02440 336 ProSiteProfiles 'Homeobox' domain profile. 192 252 IPR001356 GO:0003677
Mepo6g02440 336 FunFam Homeobox-leucine zipper protein 18 179 257 - -
Mepo6g02440 336 SMART HOX_1 194 256 IPR001356 GO:0003677
Mepo6g02440 336 SMART halz 252 295 IPR003106 GO:0006355|GO:0043565
Mepo6g02440 336 MobiDBLite consensus disorder prediction 48 73 - -
Mepo6g02440 336 ProSitePatterns 'Homeobox' domain signature. 227 250 IPR017970 GO:0000981|GO:0006355
Mepo6g02440 336 Pfam Homeobox associated leucine zipper 252 286 IPR003106 GO:0006355|GO:0043565
Mepo6g02440 336 Coils Coil 265 288 - -
Mepo6g02440 336 Gene3D - 200 250 - -
Mepo6g02440 336 SUPERFAMILY Homeodomain-like 186 253 IPR009057 -
Mepo6g02440 336 MobiDBLite consensus disorder prediction 169 191 - -
Mepo6g02440 336 CDD homeodomain 196 253 IPR001356 GO:0003677
Mepo6g02440 336 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 60 332 - -
Mepo6g02440 336 Pfam Homeodomain 196 250 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02440 Mepo-Chr6 33370509 33372717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02440 102 312 Homeobox Transcription Factor Family AT2G44910 54.054 1.55e-66 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mepo6g02440 Homeodomain 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02440 K09338 - gmx:100805312 404.445