Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02407 ATGGAGTCTTGGAGTTTTGATCCTCAAGATAAAGGGTATGTTTCAAATGACACACTTGGTAGTAGAACCAAAGGTTCAATCTTGGGTTGGGATTTGAAAACCCCATCTAGTTTTTTACCTCAACAAAACATAGAAAATGACAACAATAACCAAGGTTTTGAGGAATTGGGTTTTCGTGGTATGTTGGGAAAACAATTGTCTAACGTTGTTGATGATGATGATGATGTTGTTGTTGGTAGCAAAATTGTCACTAGTAGTTCTTTTGTTATGGCTGCACCAAATGCATTTTCAGAAAGAGAACAACAACACTTCAATTCCAAGCATTCAAACTCAATAGGTGACACTAATGGTTCTAATTCACTCATAGATTTGAAGCTTGGTAGATTTGGTGATCATAGAGATGGAATTGGTACACCATTTTCGAAGGGGGCCACGATTTTGTCGTCGTCTGGATCGTCGACGCCGTCGAAGAGGGTGAGGTCTTCGGCAGTCCATTCTCAGATTGCTTACTGCCAAGTATATGGATGTAATAAGGATTTGAGTGGTTCTAAAGATTATCACAAGAGGCATAAAGTTTGTGAAGTTCATTCAAAGACTTCTAAAGTAATAGTGAATGGAATTGAACAAAGGTTTTGTCAACAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGTCTTGCAGGCCATAATGAGCGTCGTAGAAAGCCACAAGTTGGTATTCATTCTGGAAGAGCTGGGAGGTTGCTTCAGTCATATGGAGATAGCAGATTCCAAGGAACCATGCTAACATCGGCATCTTTTATATGCCAAGACATACTCCCCGGTGAGGTCTTATCTTCTGAGAAATGTGGAAATAGTAACTGGTGGAGACCTATAAAAGCCGAGGGTGGAACCGGTTTTAGGCCTCTTTCTTCTATTCCAATTACAAATGCACATCCTCATTCAAGAACCTTGTTTCCTTCATACAACAATAAACAATTTCCTTTTCTTCAAGAAAATGGTGCTACATCTGCTACAGGAAGCATCTTCTGTGAAAACAGTAGTCATATTCCTCCTATCCAAGGAGGCTCGAGTTCCGGATCACAATCATTATTCCAAGATACCTCCTTAGGAAGTGAAGACTTCAATGTTTTTGAAACAGAATCAGCTGTTCAAGGATTATCGGGAGTATCGGATGGTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAATTCTTCAAGCCAATCAACAGGAATTCCCATGCCTAGTCATTTAGTTATTCCGAGCAGCCATAGCCATTATAGCATGAGTCATGTTTCTGAAAGTGGCGTCTCGGATAGGTTTCCGTCTGAGTTAAATCATACGGATGGAAGTCATCTTAGTCCTATATTGATATCAAACAGTAATGAAATCGCCCATTTTGAAATGGTAGATGGGGTTTTCCAAGGGTCGGATTTTGTCAACGTGAAAGACCGTCTTTCCTGTGAAGATGGCACGACCATTGACTTGCTTCAACTGTCGTCACAACTGCAGCAAGTTGAGCATCAGAGGCGAGCCTTGCAGAAAAGAACTTCTGCCTGTGCAGCTTGTCGTGACCCGGAAATATTCGTATCAGGATAA 1632 0.4112 MESWSFDPQDKGYVSNDTLGSRTKGSILGWDLKTPSSFLPQQNIENDNNNQGFEELGFRGMLGKQLSNVVDDDDDVVVGSKIVTSSSFVMAAPNAFSEREQQHFNSKHSNSIGDTNGSNSLIDLKLGRFGDHRDGIGTPFSKGATILSSSGSSTPSKRVRSSAVHSQIAYCQVYGCNKDLSGSKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVGIHSGRAGRLLQSYGDSRFQGTMLTSASFICQDILPGEVLSSEKCGNSNWWRPIKAEGGTGFRPLSSIPITNAHPHSRTLFPSYNNKQFPFLQENGATSATGSIFCENSSHIPPIQGGSSSGSQSLFQDTSLGSEDFNVFETESAVQGLSGVSDGGCALSLLSSQSQNSSSQSTGIPMPSHLVIPSSHSHYSMSHVSESGVSDRFPSELNHTDGSHLSPILISNSNEIAHFEMVDGVFQGSDFVNVKDRLSCEDGTTIDLLQLSSQLQQVEHQRRALQKRTSACAACRDPEIFVSG 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02407 543 Gene3D - 161 232 IPR036893 GO:0003677|GO:0005634
Mepo6g02407 543 Pfam SBP domain 171 244 IPR004333 GO:0003677
Mepo6g02407 543 FunFam Squamosa promoter-binding-like protein 14 162 232 - -
Mepo6g02407 543 Coils Coil 507 527 - -
Mepo6g02407 543 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 98 522 IPR044817 GO:0003677
Mepo6g02407 543 SUPERFAMILY SBT domain 169 249 IPR036893 GO:0003677|GO:0005634
Mepo6g02407 543 ProSiteProfiles Zinc finger SBP-type profile. 168 245 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02407 Mepo-Chr6 33022325 33027277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02407 122 287 SBP-box Gene Family AT1G69170 54.819 1.58e-50 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo6g02407 SBP 8.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02407 - - gmx:100777766 692.189