Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02405 ATGGGGAGAGGAAGGGTGCAATTGAAGAAGATTGAGAACAAGATCAATAGGCAAGTGACTTTTTCAAAGAGAAGATCTGGTTTACTCAAGAAAGCTCATGAGATCTCTGTGCTTTGTGATGCTGAAGTTGCTCTTATCGTCTTCTCCAACAAAGGAAAGCTCTATGAGTATTCAAGCGACCCCTGTATGGAAAAAATTCTAGAACGCTATGAAAGGTATTCATATGCAGAGAGGCAACATGTTGCAAATGATCAGCCACAAAATGAAAATTGGATTATAGAACATGCAAAGTTGAAGACAAGGTTGGAAGTCATTCAGAAAAATCAAAGGAATTTTATGGGTGAAGAACTTGATGGTCTAAGTATGAAAGAGCTTCAGCATTTGGAGCATCAACTTGATTCTGCTCTCAAACAGATTAGATCAAGGAAGAACCAACTCATGTATGAATCCATTTCAGAGCTCAGTAAAAAAGATAAGGCCCTCCAAGAAAAAAACAAATTGCTTACAATAAAGATAAAGGAGAAAGAGAAGGCACTTGCCCAACTTGAGCAGCAAAATGAGGATATGAATATCGTCTCCACAGTCCTTGCACCTCAATCATTGGAGACACTGAATATTGGAGGTTCCCCTGAAGATAGAGATGATGAAGGAAATAATGAAGAAAGTCAAACCCATGGCAACGCCCATCTTCCACCTTGGATGCTTAATTAA 711 0.3896 MGRGRVQLKKIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLYEYSSDPCMEKILERYERYSYAERQHVANDQPQNENWIIEHAKLKTRLEVIQKNQRNFMGEELDGLSMKELQHLEHQLDSALKQIRSRKNQLMYESISELSKKDKALQEKNKLLTIKIKEKEKALAQLEQQNEDMNIVSTVLAPQSLETLNIGGSPEDRDDEGNNEESQTHGNAHLPPWMLN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02405 236 Coils Coil 165 192 - -
Mepo6g02405 236 Coils Coil 125 145 - -
Mepo6g02405 236 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Mepo6g02405 236 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mepo6g02405 236 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo6g02405 236 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo6g02405 236 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo6g02405 236 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo6g02405 236 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Mepo6g02405 236 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Mepo6g02405 236 MobiDBLite consensus disorder prediction 203 236 - -
Mepo6g02405 236 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo6g02405 236 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Mepo6g02405 236 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo6g02405 236 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo6g02405 236 MobiDBLite consensus disorder prediction 208 222 - -
Mepo6g02405 236 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo6g02405 236 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02405 Mepo-Chr6 32928830 32939944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02405 1 214 MADS-box Gene Family AT1G26310 57.391 1.61e-85 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo6g02405 K-box 1.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02405 K09264 - gmx:100816836 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g01188 1 11630447 11635665 Mepo6g02405 6 32928830 32939944 ECH
Mepo3g00368 3 4959117 4964238 Mepo6g02405 6 32928830 32939944 ECH
Mepo6g02405 6 32928830 32939944 Mepo6g02405 6 32928830 32939944 ECH
Mepo1g01187 1 11608771 11614088 Mepo6g02405 6 32928830 32939944 PCT