Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02372 ATGGCTATGAAGGGTACTGATAACTGCTTCAATCACAAGCATCCAACAATAATAGGACATTGTTCTAATTCAGTGCCTCATGCTACTACACATGGAAAAAATAAGAGGGTGAGAAGCTCATGGGAGATACAAGGTCACATAATGTCTGAGAGAAAAAGGAGACAAGAAATGGCAGAGAGATTCATAGCACTTTCGGCGACGATACCTGGGTTGAAGAAGACCATCACCCGTGCTAACGCACGTGTCATTTGGAAGATAGACAAGGTTTCTGTACTTGGTGAAGCTATTAATTACGTGAAACAACTTAAAGAACGCATATCAATGCTGGAGCAACAATATTATGAGAGGAATAAAAGTACCAAGTCCATAATCTCTATTAGAAAATTTCAATCTCATCCACGTAATGATAATTTGGATTCCAATCATGTGCTCCCTGAAGTAGAGGCCATTGCCATAGAATCAGAGAAGGAACTAGTACTTATTAAAATCAACTGTGAGAAACATGAAGGCATTTTGTTCAAACTATTGTCAATGCTGGAAAATATGCACCTCTATGTTTCCACCAGTAGTGTGCTTCCATTTGGAAAAAATACCCTCAACATTACCATCATTGCTAAGCTTCATTCATCTAGTGAAGTCGACACATCACAGAACAGAACACATTTTCTTCTGATGGAGCAATCATGGGAAAATTGGCCTCTTCATTGGGAAGTGGTTGATGTGGGAAATATGCAAGGGCAATATTGTCAACAAACAAGTACTGATGATGAAGAAGAGTTCTTGAGAGACATAATTCTTCAGCAACCTGTTACATATTCTGGAAGCAGTTTATCATCTTCTAGTGAGATGGACGGCTCAGGGAAAAAGCTTCATCTTTCATCAACACCGTCCACACCAAGGACATTCATTCTCTCCTTTGATAAATCTACCATAATACCAGCTACTACTACTACTACACCAGAATCAGAAATACCAGGAACAAAGAGTAGAAGTAATAATAAGAGGATTTTGGAACCAAAAGCAAAAGCTAGTAACCAAAATGGAAGATTGGAACTATCACAAAAGTTCATTGCACTTTCAGCTACTATTCCTGGCTTGAAAAAGATCCCGAAAGTAAAAAGTCTTCTCATTGATACTCACACTTGTGATGAGCAGCGAGCGGTGCTGCCGATGACACGGGATCTTGACATTTCCAAGAGATAA 1203 0.3915 MAMKGTDNCFNHKHPTIIGHCSNSVPHATTHGKNKRVRSSWEIQGHIMSERKRRQEMAERFIALSATIPGLKKTITRANARVIWKIDKVSVLGEAINYVKQLKERISMLEQQYYERNKSTKSIISIRKFQSHPRNDNLDSNHVLPEVEAIAIESEKELVLIKINCEKHEGILFKLLSMLENMHLYVSTSSVLPFGKNTLNITIIAKLHSSSEVDTSQNRTHFLLMEQSWENWPLHWEVVDVGNMQGQYCQQTSTDDEEEFLRDIILQQPVTYSGSSLSSSSEMDGSGKKLHLSSTPSTPRTFILSFDKSTIIPATTTTTPESEIPGTKSRSNNKRILEPKAKASNQNGRLELSQKFIALSATIPGLKKIPKVKSLLIDTHTCDEQRAVLPMTRDLDISKR 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02372 400 PANTHER BHLH TRANSCRIPTION FACTOR 259 372 - -
Mepo6g02372 400 Pfam Helix-loop-helix DNA-binding domain 46 103 IPR011598 GO:0046983
Mepo6g02372 400 SMART finulus 47 108 IPR011598 GO:0046983
Mepo6g02372 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 45 117 IPR036638 GO:0046983
Mepo6g02372 400 MobiDBLite consensus disorder prediction 316 345 - -
Mepo6g02372 400 Gene3D - 31 119 IPR036638 GO:0046983
Mepo6g02372 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 102 IPR011598 GO:0046983
Mepo6g02372 400 MobiDBLite consensus disorder prediction 273 295 - -
Mepo6g02372 400 Coils Coil 92 112 - -
Mepo6g02372 400 MobiDBLite consensus disorder prediction 316 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02372 Mepo-Chr6 32251162 32261149 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02372 38 206 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.341 2.13e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g02372 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02372 - - cam:101501845 206.838