Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02208 ATGGCTTTTCATCACGACCATCTCTCTCATGAAATCAATTTTCAACCATTCAATGAAGAGCAACAGTTAAATCAAAGCAGAGACATGCAAAGACTACTACCATTCACCGGTGCTGGTGCCGGATCAGCGCCGAATTGGCTCAACAACGCTGTAAACCTACGGCAGCAGAATTTCCTCCACTTACAGCCAGATACATCACAAAACGAGGACGTAAGAGGTATGAACATGATGGAGAAAACCCGGGATCGGAACCGGACCGAAAGCAACACAGAATCATCAGAGGAGTTATCACAATACAAAGCAGACATACTTGGACACCCTCTCTACGATCAGCTTCTATCTGCTCATGTTTCGTGTCTGCGAATTGCTACGCCCGTCGATCAGCTTCCGCGGATCGACGCACAGCTTCAGCAGTCGCAGCGCGTGGTGGATAAGTACTCTTCACTTGCTAATGGTGTTGTGGATGAAAAGGAGCTTGATCAATTCATGACGCATTATGTTCTCCTGCTCTGTGCTTTTAAAGAACAATTGCAACAACATGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTGGAGCAGTCTCTACAAAGCTTGACCGGTGTATCTCCTGGTGAAGGGAGTGGTGCAACAATGTCGGACGATGAAGATGACCAAGCAGAGAGCAATGCAAACTTATATGAAGGAAGCCTTGATGGTGGTGATAGTCTCAGCTTTGGTCCTCTTGTTCCTACTGAAAGTGAAAGATCTTTAATGGAACGTGTGAGGCAGGAGTTGAAGCACGAGCTAAAACAGGGTTACAAGAGTAAGATTGTGGACATAAGAGAAGAAATTCTAAGGAAAAGAAGAGCGGGAAAGCTCCCAGGTGACACCACCTCCCTTTTGAAAGCTTGGTGGCAATCACACTCTAAATGGCCTTATCCTACTGAAGAAGACAAGGCTAGGTTGGTCCAGGAAACAGGACTTCAATTAAAGCAAATAAATAACTGGTTCATTAATCAAAGAAAAAGGAATTGGCATACTAATCCTTCGTCTTCCACTGGCTCCAAAACCAAACGCAAGAGTAGTGGCACAGGTGAAACAAGTAACCAGAGTTTCATGTGA 1113 0.4537 MAFHHDHLSHEINFQPFNEEQQLNQSRDMQRLLPFTGAGAGSAPNWLNNAVNLRQQNFLHLQPDTSQNEDVRGMNMMEKTRDRNRTESNTESSEELSQYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSSLANGVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGSGATMSDDEDDQAESNANLYEGSLDGGDSLSFGPLVPTESERSLMERVRQELKHELKQGYKSKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGSKTKRKSSGTGETSNQSFM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02208 370 Pfam KNOX1 domain 99 140 IPR005540 GO:0003677|GO:0005634
Mepo6g02208 370 SUPERFAMILY Homeodomain-like 283 347 IPR009057 -
Mepo6g02208 370 SMART KNOX2_2 149 204 IPR005541 GO:0003677|GO:0005634
Mepo6g02208 370 MobiDBLite consensus disorder prediction 77 96 - -
Mepo6g02208 370 ProSiteProfiles ELK domain profile. 261 281 IPR005539 GO:0003677
Mepo6g02208 370 FunFam homeobox protein knotted-1-like 3 isoform X1 282 343 - -
Mepo6g02208 370 SMART KNOX1_2 97 141 IPR005540 GO:0003677|GO:0005634
Mepo6g02208 370 ProSiteProfiles 'Homeobox' domain profile. 281 344 IPR001356 GO:0003677
Mepo6g02208 370 MobiDBLite consensus disorder prediction 338 370 - -
Mepo6g02208 370 Gene3D - 287 364 - -
Mepo6g02208 370 MobiDBLite consensus disorder prediction 204 223 - -
Mepo6g02208 370 CDD homeodomain 284 345 IPR001356 GO:0003677
Mepo6g02208 370 Pfam Homeobox KN domain 301 340 IPR008422 GO:0003677|GO:0006355
Mepo6g02208 370 SMART ELK_2 261 282 IPR005539 GO:0003677
Mepo6g02208 370 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 107 352 - -
Mepo6g02208 370 Pfam KNOX2 domain 154 203 IPR005541 GO:0003677|GO:0005634
Mepo6g02208 370 SMART HOX_1 283 348 IPR001356 GO:0003677
Mepo6g02208 370 Pfam ELK domain 261 282 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02208 Mepo-Chr6 27131955 27138221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02208 97 367 Homeobox Transcription Factor Family AT5G11060 82.545 1.82e-165 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mepo6g02208 KNOX2 2.6e-19 No_clan