Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02129 ATGGGGAAGAAAAAGAAGCAAGTAGGAGAAACAAGTGAAGAAAATGGGAATCATAGTAACGACGGTGATAAAAGTTTGAATGGGTATGATAATGATACTTTGTTATTTATAGCCACGGCTCAAGAGTTGAAGGAAGAAGGTAATAAGATGTTTCAAAAGAGGGATCTTCAAGGAGCTATGGTAAGGTATGAGAAAGCGCTCAAATTGCTTCCGAGAGATCATATAGATGTGTCGTATTTGCGGAGTAATATGGCTGCGTGCTATATGCAGATGGGACTTGGTGAGTACCCTAGGGCGATTAATGAATGCAATCTGGCTCTTGAAGTTACTCCGAAATACGGTAAAGCTTTGTTGAAGAGAGCGAGGTGTTATGAGGCTTTGAATAGATTGGATTTAGCATTGAGAGATGTTAGTACTGTTTTGAAGATGGAGCCGAATAATATCATGGCGTTGGAGATCTCGGATAAGGTGAAAAGTGCTCTTGAAGATAGAGGGTTAAGAGTAAATGATGAGAAAATTGAGTTGCCTCCGGATTATGTCGAACCATCTTTTGACGTGCCTTCCGAAAAGGCAAAAGAAAAGAAACAGAAGAAAAAGAGCAAAAAAGAGAAGGTGAAGGCTTCCGATGAAATTTTAGAGAAGCAAACTGAGGAGAAACTAGAAGAGAAAAAAGAGGAGGACAACACTGCACCAAATAAGGCTGAGGACGATCATCTCAAAGAGAAAAAGCGTAATAAATCGAAAAAGAAGGCAGCTAAGGAAAAAATTGATAAGCAGAAAGAGGATGTTAAGGAGGTCAATGAAGAAAAAAGTAATGGTAGAAGTGTAGATGTATCTAAAAAAACAGCAAAACTTGTTTTTGTTGATGATATAAGATGGGCTCAATTGCCGGTTAATTGCAGCCTTTTTCAGCTAAGAGAAGTTATTTGTGATAGGTTCCCAAGCCTAGGAGCAGTTCTTGTCAAATATAGAGATCAAGAAGGTGACTTGATCACAATCACTTCGGATGAAGAATTGAAGTGGGCTGAAACAGGATCACAGGGTTCTATCCGACTGTATATAGTAGAAGCTAATCCTAATCACGATCCATTCTATGAGAAACTTCATCTGAATGATGTGGAAAAGGTTGAAATGGATAATGCTCCTAAGAACGGTTGTGTGGTGAGATCAAAGGAAATTGTTAGCTCATCTTGTGTTGAGGATTGGATAATTCAGTTCGCGCAACTGTTCAAGAATCACGTTGGGTTTGAATCCGACAGATACTTAGATTTTCATGAACTTGGGATGAAGCTCTATTCAGAGGCTGTGGAAGAGACGGTTACAAGTGAAGAAGCACAAGGCCTATTTGACATGGCAGGAGGCAAGTTCCAAGAGATGACAGCTCTAGCATTGTTCAATTGGGGAAATGTGCATATGTCTAGGGCTAGGAAGAAAGTGTATTTAACCGAAGAAGATTCTTCTAGAGAGCATATGTATGAACAAATTAAAAGTTCGTATGAATGGGCGCAGAAAGAATATGCAAAAGCTGGAGAAAAATTTGAAGCAGCCATTAAAATTAAGTCAGATTTTTACGAAGGCTTTCTTGCTCTTGGTCAGCAGCGGTTTGAACAAGCGAAACTTTCTTGGTATTATGCACTCAGTAGTAATATAGATTTACCGACATGGCCCTCCACAGAGGTTCTTCATCTTTACAACAATGCTGAGGAGAATATGGAAAAAGGAATGCTGATATGGGAAGAATCACAAGAGCAGCAGCTCAGTGAAACCTCGACTACCGGGTTGGATGGGTTATTTGAAAATATGTCATCAGATGAAACTGCTGAGCTGGCGGCAAACATGAGGTCACAGATAAATCTCTTGTGGGGTACTATGCTGTATGAACGCTCACTTGTGGAATTCAAATTAGGGCTACCCGTATGGCATGAATCATTGGAAGCTGCGATTGAGAAGTTTGAACATGCAGGAGCTTCTCCAACAGATGTAGCTGTAATGGTGAAAAACCACTGTTCAAATAACACTACTGTAGATGGTCTAGGTTTCAAAATTGATGAAATAGTTCAGGCATGGAATGAGATGTATGACGCTAAAAAGTTGCAGAAAGGAGTTTCATCCTTTCGTTTGGAACCCTTGTTCAGAAGAAGAGTATCGAAGATTTACCATGCCTTTGAGCTTGTATGA 2178 0.3985 MGKKKKQVGETSEENGNHSNDGDKSLNGYDNDTLLFIATAQELKEEGNKMFQKRDLQGAMVRYEKALKLLPRDHIDVSYLRSNMAACYMQMGLGEYPRAINECNLALEVTPKYGKALLKRARCYEALNRLDLALRDVSTVLKMEPNNIMALEISDKVKSALEDRGLRVNDEKIELPPDYVEPSFDVPSEKAKEKKQKKKSKKEKVKASDEILEKQTEEKLEEKKEEDNTAPNKAEDDHLKEKKRNKSKKKAAKEKIDKQKEDVKEVNEEKSNGRSVDVSKKTAKLVFVDDIRWAQLPVNCSLFQLREVICDRFPSLGAVLVKYRDQEGDLITITSDEELKWAETGSQGSIRLYIVEANPNHDPFYEKLHLNDVEKVEMDNAPKNGCVVRSKEIVSSSCVEDWIIQFAQLFKNHVGFESDRYLDFHELGMKLYSEAVEETVTSEEAQGLFDMAGGKFQEMTALALFNWGNVHMSRARKKVYLTEEDSSREHMYEQIKSSYEWAQKEYAKAGEKFEAAIKIKSDFYEGFLALGQQRFEQAKLSWYYALSSNIDLPTWPSTEVLHLYNNAEENMEKGMLIWEESQEQQLSETSTTGLDGLFENMSSDETAELAANMRSQINLLWGTMLYERSLVEFKLGLPVWHESLEAAIEKFEHAGASPTDVAVMVKNHCSNNTTVDGLGFKIDEIVQAWNEMYDAKKLQKGVSSFRLEPLFRRRVSKIYHAFELV 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02129 725 Pfam PB1 domain 282 355 IPR000270 GO:0005515
Mepo6g02129 725 SUPERFAMILY TPR-like 40 547 IPR011990 GO:0005515
Mepo6g02129 725 CDD PB1 284 354 - -
Mepo6g02129 725 MobiDBLite consensus disorder prediction 1 20 - -
Mepo6g02129 725 PANTHER PROTEIN CLMP1 3 723 IPR044517 -
Mepo6g02129 725 MobiDBLite consensus disorder prediction 1 27 - -
Mepo6g02129 725 MobiDBLite consensus disorder prediction 203 242 - -
Mepo6g02129 725 Coils Coil 239 269 - -
Mepo6g02129 725 MobiDBLite consensus disorder prediction 252 275 - -
Mepo6g02129 725 Coils Coil 188 226 - -
Mepo6g02129 725 Gene3D - 274 357 - -
Mepo6g02129 725 ProSiteProfiles TPR repeat profile. 114 147 IPR019734 GO:0005515
Mepo6g02129 725 MobiDBLite consensus disorder prediction 177 275 - -
Mepo6g02129 725 Gene3D Tetratricopeptide repeat domain 38 166 IPR011990 GO:0005515
Mepo6g02129 725 ProSiteProfiles PB1 domain profile. 280 357 IPR000270 GO:0005515
Mepo6g02129 725 ProSiteProfiles TPR repeat profile. 40 73 IPR019734 GO:0005515
Mepo6g02129 725 SMART PB1_new 280 357 IPR000270 GO:0005515
Mepo6g02129 725 SUPERFAMILY CAD & PB1 domains 283 366 - -
Mepo6g02129 725 SMART tpr_5 78 113 IPR019734 GO:0005515
Mepo6g02129 725 SMART tpr_5 114 147 IPR019734 GO:0005515
Mepo6g02129 725 SMART tpr_5 40 73 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02129 Mepo-Chr6 25397150 25402850 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02129 23 147 Calmodulin-binding Proteins AT3G25230 34.532 1.54e-09 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g02129 6 25397150 25402850 Mepo6g02129 6 25397150 25402850 ECH