Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02114 ATGAAGCAGTCTTTTGATCCTTCATTTTTCGGTCCTTCCAAGATTCCACCTATAAATACAGCTGGAAAATCGAGGCATGGTGCGTTGGAAGTTTCATCTGAATCTGACTCATACCATGCTTCATCTGATGCCAGTCTCTTTTCTAGCTCATTACCTGTTCTTCCACATGAAAAGTTGAACTTAAATGAAACTAAAAATGGTTTTCAATCCGTTGATGACATCTCAACTAACTTTAAAAAGCATCATCAAGAGGCAGAGCTTAACGGTTCCCTTGACGATGGTAATAATCACGCAATCGGAACCATGCTTCCTGATGATGATGAAGAGCTTTTGGCTGGCATAATGGATGATTTTGACTTACGAGGTTTGCCTGGTTCCCTTGAGGACTTGGAAGAGTATGATCTTTTTGATAGTAGTGGAGGTTTGGAACTAGAAACAGATCCACAGGAAAACCTCAGTGTGGGAATATCTAAGTTAAGCTTTTCTGATAGCTCTGTTGGAAATAGTTTGCTCCCTTATTCTTTACCTAATGGTGTGGGAAGCGGAGCTGTTGCTGGAGAACATCCATATGGAGAGCATCCTTCTCGAACATTGTTTGTTCGAAATATTAACAGTAATGTGGAGGATACAGAGCTGCGGACTCTTTTTGAGCAATATGGTGATATTAGAACCCTATATACTGCATGTAAACACAGGGGGTTTGTAATGATATCATATTATGACATCCGTGCTGCTCGGACAGCTATGCGTGCATTACAAAATAAACCTCTGCGGCGAAGGAAACTTGACATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAAGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATCCATCAGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTATGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATACTATGATGTAAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGAGTGACATAGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATTTGATGCTCCAACTGAATCAAGAGCTTGACCAAGATGAGTCTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTAGCCGGCTCTCCGCCAGGTAATTGGTTACAGTACAACAGTCCTATTGAGCAGAGTTCATTGCCAAATATAAATCATTCTCCTGGTTCCAAAATCATGAGCCCAACAACCAGCAACCATTTACCGGGATTAGCTGCAATTTTGCAACCACAGTTGTCGAACACAGTTAAGGCCGCAACTATTGGCCAGGACATAGGAAGGAGTAGTCATGGAGACCACATATTTCCCAATAAGATTTCATCCGCTGGATCTACTTTCAACTCACATTCACTTCCAGAGCCAAAATTTAGTCCATATCGTGGATCTTTGTCCTCGTTTGGTGCATCAACATCAAATGGGTCGTCAGTGGAAACCTTGACTGCTCCACAATTTCTATGGGGAAGTCCAAACTTATCCTCAGAGCCAACCAAACCTTCAGCTTGGCCAAGGCCATCTGTGGGACATCAACTTAGTACATCGAATGGAACGAGTCATGCTTTCCCGTACTCAAGTCAGAACAATTCCTTTGTCAGTTCATCTCAGCAGCAACATCATCATCATCATGTCGGTTCTGCTCCTTCAGGTCTGCCTTTTGAAAGGCACTTTGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTGGCTATAGAGGCATGGGTCTAGGGCACAATGATGGAAATTACATGCTTAATAGTGGCATTTCTGGTAATGTTGGCGTTTCTATTCCAAGAAATATGCCTGACAATGGTTCATCTAACTTCCGAATGAGATCTTCTCCTATACTTAGCCCTGTATTTTTCGGTAATGGTCCTTATCCAGGACTACTACCCACTGCTATGGAGAGTTTTACTGACCGTGTTAGGAGTAGATGGATCGACAACAATGGAAGCCAAGTTGACAACAAGAAGCTATTTCAGCTGGACTTAGATAAGATTAGGAGTGGTGAAGATACAAGGACTACGCTGATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTGTTAGCTGCCATTGATGAAAATCACAAGGGCACCTATGATTTTCTCTATCTGCCAATTGACTTTAAGAATAAATGCAACGTCGGTTATGCATTTATCAACATGTTGTCACCATCGCTTATTATTCCATTCTACGAGACATTCCATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCGTATGCTCGAATCCAAGGGAAGAATGCCCTCGTGAACCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAACGCTGCCGACCTATTGTCTTCCACTCAGATGGTTCTGAAGTTGTTGATCAGATCATACAAGAGCATCTCCCCTCCACCTCCAACAATATGTATATTCAGGCAGTTAAGTCAAGTGAGTTACAATTAAGCGATTCCTTCGGATACTTTCCAAAGGATGGTCCTCCTACGAGTTTGAATGCAAATTAA 2598 0.4142 MKQSFDPSFFGPSKIPPINTAGKSRHGALEVSSESDSYHASSDASLFSSSLPVLPHEKLNLNETKNGFQSVDDISTNFKKHHQEAELNGSLDDGNNHAIGTMLPDDDEELLAGIMDDFDLRGLPGSLEDLEEYDLFDSSGGLELETDPQENLSVGISKLSFSDSSVGNSLLPYSLPNGVGSGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRTLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDPSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRSDIAGKRIKLEPSRPGGARRNLMLQLNQELDQDESRSFRYQVGSPLAGSPPGNWLQYNSPIEQSSLPNINHSPGSKIMSPTTSNHLPGLAAILQPQLSNTVKAATIGQDIGRSSHGDHIFPNKISSAGSTFNSHSLPEPKFSPYRGSLSSFGASTSNGSSVETLTAPQFLWGSPNLSSEPTKPSAWPRPSVGHQLSTSNGTSHAFPYSSQNNSFVSSSQQQHHHHHVGSAPSGLPFERHFGFFPKSSETSLMNNVGYRGMGLGHNDGNYMLNSGISGNVGVSIPRNMPDNGSSNFRMRSSPILSPVFFGNGPYPGLLPTAMESFTDRVRSRWIDNNGSQVDNKKLFQLDLDKIRSGEDTRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFLYLPIDFKNKCNVGYAFINMLSPSLIIPFYETFHGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHSDGSEVVDQIIQEHLPSTSNNMYIQAVKSSELQLSDSFGYFPKDGPPTSLNAN 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02114 865 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Mepo6g02114 865 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Mepo6g02114 865 CDD RRM3_MEI2_like 702 787 IPR034454 -
Mepo6g02114 865 Gene3D - 280 379 IPR012677 -
Mepo6g02114 865 Gene3D - 185 279 IPR012677 -
Mepo6g02114 865 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Mepo6g02114 865 FunFam Protein MEI2-like 1 280 375 - -
Mepo6g02114 865 CDD RRM1_MEI2_like 195 271 IPR034453 -
Mepo6g02114 865 Pfam RNA recognition motif 2 699 795 IPR007201 -
Mepo6g02114 865 MobiDBLite consensus disorder prediction 511 565 - -
Mepo6g02114 865 MobiDBLite consensus disorder prediction 511 570 - -
Mepo6g02114 865 FunFam MEI2-like protein 5 isoform 2 185 279 - -
Mepo6g02114 865 SUPERFAMILY RNA-binding domain, RBD 701 786 IPR035979 GO:0003676
Mepo6g02114 865 SMART rrm1_1 282 350 IPR000504 GO:0003723
Mepo6g02114 865 SMART rrm1_1 701 777 IPR000504 GO:0003723
Mepo6g02114 865 SMART rrm1_1 197 265 IPR000504 GO:0003723
Mepo6g02114 865 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Mepo6g02114 865 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Mepo6g02114 865 CDD RRM2_MEI2_like 280 350 - -
Mepo6g02114 865 PANTHER RNA RECOGNITION MOTIF-CONTAINING 35 814 - -
Mepo6g02114 865 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02114 Mepo-Chr6 25153903 25160287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02114 191 389 Eukaryotic Initiation Factors Gene Family AT1G71770 26.009 4.48e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02114 - - gmx:100787152 1392.48