Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02113 ATGGGTCGTGCTCGTGGGAAGTTAACTATTAAACACATTCAAGATGATAGAGCTCGGAAATTCGCTTTCAATCAGAGAAACAATAATTTGGCAAAAAAAGTATCTGATTTTTCTAGAAAGTTTGGAGTTGAAGCTTGCTTGATTGTATATGATGGTTATGGTGATGGTAGACCAATAACTACGCCACAAGATTCGACAATTGTACGGTCCATGCTTGAAAACTATGAGCAACAAAAGATTGAGGGTACAACTACAAAGATCTTTGATGTGAAGGACTATTTTGCAAACAAGATAAAGAAGGCCGAAGGTGAGATTTCCAAAGTGCACAAAGAGATCTTGATGAAAATGTATCCAACTTGGCACCCATGCTTCATGAACATGAAAGAGGAACAACTCAAAACTTTCATTAGCATTCTAGATGGCAAGATTCAAGCTTGCAATAAAAGGATTAGCATGCTGAACAAAATGCAACAAAATGATGAAACTAGTTTCTTGGATAGCATTCCTCAAAGGAAATATATATCTAATCATGTTGATGTGCAACAAAGTGAAACTAGTTTCACACAAAACACTGTTGATCCTTTGAACTCTTCTGGTAGTTTGCCTCCTGTTTTGCCCACTGGCACTAACCAATTTGGTGAATTTGTGAAGTTGGATGATGTAATGGCTGAACCTAGAGAATGGACTGGTCCACTTGGTGAACTTGAGGAGTTGAATAATTTTGAGGCCGAACCTGTTCAAGAATGGCTTGCTAAACTTGATGAAATTGGTGAAATGGATTCCACTAATCATGTTGATGTGCAACATAGTGAAGCTAGTTTCACACAAAACACTGCTCACACACAAAGCATGGCTCAGGAAAGATTTTACCCTTCAAATTCAAACCAATTTGAGGGCATGCATGATGGCTTTTCTCAATGGCAACCTATCTCTGATTCTTTGAAGTCTCCTGTTAGGTTGCCTCCTGTTTTGTCTGCTAACCAACTTGGTGAAGGTGTGGAGTGTACTGATCATGAATGGTTTACTGATGATGGTGATGAACTTATGAAGTTGATTAGTCAAGATGATGTGTTTGCATGGAAAGATGACTCTTTCTTGTCTCAAAATGAAGAATATGCAACTTTGGAGGAGGGCATGAGTAACAAACCAGATTTTGGTCGTACTGACAAAACTCTCTTCCAGTGA 1185 0.3857 MGRARGKLTIKHIQDDRARKFAFNQRNNNLAKKVSDFSRKFGVEACLIVYDGYGDGRPITTPQDSTIVRSMLENYEQQKIEGTTTKIFDVKDYFANKIKKAEGEISKVHKEILMKMYPTWHPCFMNMKEEQLKTFISILDGKIQACNKRISMLNKMQQNDETSFLDSIPQRKYISNHVDVQQSETSFTQNTVDPLNSSGSLPPVLPTGTNQFGEFVKLDDVMAEPREWTGPLGELEELNNFEAEPVQEWLAKLDEIGEMDSTNHVDVQHSEASFTQNTAHTQSMAQERFYPSNSNQFEGMHDGFSQWQPISDSLKSPVRLPPVLSANQLGEGVECTDHEWFTDDGDELMKLISQDDVFAWKDDSFLSQNEEYATLEEGMSNKPDFGRTDKTLFQ 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02113 394 SUPERFAMILY SRF-like 5 100 IPR036879 GO:0003677|GO:0046983
Mepo6g02113 394 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 52 IPR002100 GO:0003677|GO:0046983
Mepo6g02113 394 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Mepo6g02113 394 Gene3D - 15 97 IPR036879 GO:0003677|GO:0046983
Mepo6g02113 394 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02113 Mepo-Chr6 25152245 25153429 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02113 1 228 Type I MADS-box Gene Family AT5G55690 24.409 2.29e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo6g02113 SRF-TF 1.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02113 - - mtr:11417692 252.677