Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02112 ATGGGCCGTGGTCATGGGAAATTAACTATTAAACACATTCAAGATCGGAGAGCTCGGAAATCAACTTTCAATCAGAGAAGCGATGGATTGGCAAAAGAAGTTTCTGAATTTTCTAGCAAGTTTGGAGTTGAAGCTTGCTTAATTGTGTATGATGGTGATGGTAGACTATTGACTTGGCCACAAAACTCAGCCATTGTACAATCCATTGTTAATAACTATGAGCTTCAAAAGATTGAGACAACTCCAAAGATTTTTGATGTGAAGGACTATTTTGCAAATAAGAAGAATAAGGTTGAAGCTGAGATTTCCAATGTGCACAAAGAGATTGTGATGAAAATGTATCCAACTTGGCACCCATGCTTCATGAACATGGAAGGGGAACAACTCAAAACTTTCATCACTATTCTAGATGGCAAGATTCAAGCTTGTAATCACAAAATTAGCATGCTAAAGAAAATGCAACAAAGTACTGAAAATGGTTTCATGCTAAACACTACTCAGATGCAAAATGTGGCTCCAAAGAATGTTGTCTCCTCTCATTTGAAGCCACTTGGTGAAGTTGAAGAATTGGATGATTTTATGGATTGGGCTAATCAAGTACTTGATAAAGTTGCATATTTGGATGATCCAGTTGCTAAACCTGTTAAATTGGCAGATCTCCAGAGAATATTGAGCAACATTGGACCTGCTGCAGGAACTGTGCGACAGTTTCTTGAAAAGCAGAAAAATAACGTAACGGCTGTCGTATTTTGCACTACTAGCACAACTGATACTGAAATATATAAAAGGCTGCTTCCACTTTACTTTCCCCGGGATAAACATGAGGAGCAAGTTTCTTTGTCAAAACTTCCTGCAGATGTGGGGGATGAAAATGGTGAGACCATCATAGATGAGCGTAAAACTAGAATAAAGCCTTTACCTAAAAAAGTGTTTCAAGATCACCTGATGCTGCAGTTGATATTCCTGTCAGCGATATTAGCCTGGTTTATCAGATGTGCCATGAATTTGTAA 1011 0.3818 MGRGHGKLTIKHIQDRRARKSTFNQRSDGLAKEVSEFSSKFGVEACLIVYDGDGRLLTWPQNSAIVQSIVNNYELQKIETTPKIFDVKDYFANKKNKVEAEISNVHKEIVMKMYPTWHPCFMNMEGEQLKTFITILDGKIQACNHKISMLKKMQQSTENGFMLNTTQMQNVAPKNVVSSHLKPLGEVEELDDFMDWANQVLDKVAYLDDPVAKPVKLADLQRILSNIGPAAGTVRQFLEKQKNNVTAVVFCTTSTTDTEIYKRLLPLYFPRDKHEEQVSLSKLPADVGDENGETIIDERKTRIKPLPKKVFQDHLMLQLIFLSAILAWFIRCAMNL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02112 336 PANTHER GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED 230 307 - -
Mepo6g02112 336 Gene3D - 15 74 IPR036879 GO:0003677|GO:0046983
Mepo6g02112 336 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 59 IPR002100 GO:0003677|GO:0046983
Mepo6g02112 336 SUPERFAMILY Macro domain-like 232 298 IPR043472 -
Mepo6g02112 336 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Mepo6g02112 336 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Mepo6g02112 336 SUPERFAMILY SRF-like 4 76 IPR036879 GO:0003677|GO:0046983
Mepo6g02112 336 Gene3D Leucine Aminopeptidase, subunit E, domain 1 229 274 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02112 Mepo-Chr6 25140658 25144839 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02112 1 117 Type I MADS-box Gene Family AT5G55690 30.645 4.65e-10 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo6g02112 SRF-TF 8.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02112 - K24997 mtr:11413180 387.882