Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02108 ATGGGTCGTCCACGTGGAAAATTAACTTTGAAACACATTCGAGATGAAAGAGCTCGGAAATTAGCTTTCAATCATAGAAGCAAGAGATTGGCAAAAAACGTTTCTAAATTTTCTAACAAGTTTGGAGTTGAAGTTTGCTTGGTTGTATATGATGGTGATGGTAGACCAATGACTATGCCACAAGATTCGACAATTGTACGGTCCATGCTTGAAAAATATGAGCAACAAAAGATTGAGGGTACAACTACAAAGATCTTTAATGTGAAGGACTATTTTGCAAATAAGAAGAATAAGATTGAAGCTGAGATTTCCAAAGTGCACAAAGAGATTGTGAAGAACAAGTATCCAACTTGGGATCCATGTTTCGTTAACATGGATGAAGAACAACTCAAAGCCTTCACTGCTATTGTAAATTCCAAGATTGAAGCTTGTGATCAAAGAATTAGCATGCTGAAAACTATGCACCAAGGTGATCAAACTAGTGCCTTGCATGACACTCCTCAAAGGCAGCATACCGTTGATGATCATTTGAAGCAAGTTTATGATATTAGTGAAATGGTTCAAATGCCTTATAGCTCTGATGATCCTTTGAAGTCACTTGATGATATTATTAATGAGACTGTGGATTTCACTAATCATGCTAGTTTGCCTCCTGTTTCATCAACAAGAAAAATTGGTGAAGTTGTGGAGTTTGATGATCTAATTGCTGAACCTAAGGAATGGACTAATCAACTTGGTGAGATTGTGGAGTTGGATGATCTAGTGGCTGAAGAATGGCATACTCAACTTGTTAATTCTGATAATCAACAAGAATATGAATGGATTAATCAACCCGCAGCGTTTGAGTGGCAAGATATTTCCTTTTTACCTCAGAATGAGCAACAAGGGGCAACTTTGGATGCCTTTCCCCAATCAAGATGA 921 0.3746 MGRPRGKLTLKHIRDERARKLAFNHRSKRLAKNVSKFSNKFGVEVCLVVYDGDGRPMTMPQDSTIVRSMLEKYEQQKIEGTTTKIFNVKDYFANKKNKIEAEISKVHKEIVKNKYPTWDPCFVNMDEEQLKAFTAIVNSKIEACDQRISMLKTMHQGDQTSALHDTPQRQHTVDDHLKQVYDISEMVQMPYSSDDPLKSLDDIINETVDFTNHASLPPVSSTRKIGEVVEFDDLIAEPKEWTNQLGEIVELDDLVAEEWHTQLVNSDNQQEYEWINQPAAFEWQDISFLPQNEQQGATLDAFPQSR 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02108 306 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Mepo6g02108 306 Gene3D - 15 75 IPR036879 GO:0003677|GO:0046983
Mepo6g02108 306 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 13 58 IPR002100 GO:0003677|GO:0046983
Mepo6g02108 306 SUPERFAMILY SRF-like 5 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02108 Mepo-Chr6 25103007 25103927 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02108 1 147 Type I MADS-box Gene Family AT5G55690 31.169 1.38e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo6g02108 SRF-TF 4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02108 - - mtr:11417692 316.235