Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02107 ATGAGTTTTGGAAGCAAAGAGAAATTGAAAGGCGTAAGCTTGAGTTCATCGGCTGAAAGCAAGATGAACACCAACAAAGAGACGGAGAAGACAGTTGCTCAATATGGTTTAGATGCTGAGCTTCTTGCCGAGTTTGAGCAATCTAGAGTTTATGGCAAATCATTTGAATACTCAAAGACTATTCTTGATCCTCCCAGGTTAGTTTCTGAGGAGAAAATGATTACATATTTGTCTAGAATCCAAAGGGGTGGCTTTATCCAACCCTTTGGTTGTCTGGTAGTAATTGAAGAATCCACATTTAGAATCATAGGTCACAGTGAAAATTGCGTTCAATTGTTAGGTGATATTATTGGTTCAGAACATTTTGTGGGTCTAATTGGTGTTGATGCCACAACACTATTCACTCCCCCTTCAGGGTCTTCCCTGGTAAAAGCTGTGGCTTCTAGGGATATTTCACGTTTGAACCCTATTTGGGTCCATGCAAGGACTACAGAGAAGCCATTTTATGCCATACTGCATAGGATTGATGTTGGGGTTGTAATTGATTTGGAGCCTGCAAGGTCTAGTACTGGTCCTGCACTGTCACTGTCTGGGACATTTCAATCACAGAAGATGGCTGTTAGTGCAATTTCAAGGCTGCAATCTTGTCCTCGGGAAGACATTAGTTTGTTGTGTGATACTGTTGTTGAGGAAGTCCAAAAGCTTACTGGATATGACAGGGTTATGATTTATAAGTTTCATGAGGATGATCACGGTGAGGTTGTATCTGAGATCAGGAGGTCTGATTTGGAGTCTTATTTAGGTTTGCATTATCCTTCCATAGATATCCCTCAAGCTGCTCGGTTTTTGTTCAAACAAAATCGAGTCAGGTTGATTTTTGATTGCGATGCAAAGCCGGTTAAGGTCATTCAGAGTCATGAACTAAAACAACCTCTTTGCTTGGTCAACTCAACCCTTAGGTCACCACATGACTGTCACAAACAGTACATGGCTAACATGGGCATAATTGGCTCTCTTGTGATGGCGGTTGTAATCAATGAAAAGGATACAACCAGGCTTTGGGGTTTGCTAGTTTGTCATCACACTTCACCACACCATGTGTCTTTCCCGGTTCGCCATGCTTGTGAGTTTGTAATGCAGACTTTTGGAATGCAGCTTTACATGGAGATTCAATTGGCCTCACAGATGGCAGAGAAGAGAATTCTTAAAACACAAACCATGCTGTGTGACATGCTCCTACGCGATGCACCATTTGGCATTGTGACTCAATCCCCAAGTATCATGGATCTTGTGAAGTGTGATGGGGCTGCCATGTATTATGATGAAAAGTGTTGGTTGTTAGGCATAACCCCAACTAAATTACAGGTTAAAGACATTGCAGAATGGCTACTTAGTAATTATAGCGACTCAACAGGTTTGACCACTGAAAGTCTGGTCGACGCTGGTTATCCAGGTGCTACTTTGTTGGGAGATGCAGTTTGTGGCATGGCCTCGGCACTAATCAACCCAAGGCATATTTTGTTCTGGTTTAGGTCTCACAGTGCTAAGGAAATACAATGGGGAGGAGCCAAGCACCATCCAGCTGATAAGGATGATGGAGGAAAAATGTACCCAAGAACATCGTTTAAGGCTTTTCTCGAAGTAATTAAAAGTAAAAGTTTGCCTTGGGAAATATCAGAAATCAACGCAATTCACTCATTGCAACTAATCATGCAAGATTTATTCCAGGACACAGACAACTCTTCTCCAAAGACTCTAAATGATTTTGAGAAAAGTGACGCTCCAATCGGTGGATCGCATGAAATCAGTTCAATAGCAATTGAAATGGTGAGACTAATTGAAACAGCAGCAGTCCCAATATTTGGGGTTGATTCGGAAGGCCTGATCAACGGATGGAATGTTAAAATTGCTGAATTGACAGGTCTTCATACCAGTGAAGCTATGGGAAAATCCCTACAAAATGAAGTTGTACATGTCGACTCACATGAAACTCTGACAAATATTCTGAGAAGAGCTTTGCAAGGTCAAGATAACAAAAATGTTGAGTTGAAAATAAACCGTTTTGTGCTTCATCAAGAAAAGGAAGTTGTATATCTCATGGTCAGTTCCTGCATAAGTAGAGACTACACAAATGCTATTGTTGGGGTATGCTTTGTAGGTCAAGACATCACTTTTGAAAAAGTGATTGTAAAGAAATTCATCAAGTTGGAAGGCGATTACAAAGCTATCATGCATAGTCTTAATCCGCTGATTCCACCAATATTCGCTTCTGATGAGAATGCTTGCTGCTCTGAATGGAATGTAGCCATGGAAAGGGTAACCGGATGGAAAAAAGATGAGGTCATAGGGAAAATGCTTCTTGGGGAAATCTTTGGAAGTTTTTGTCGATTGAAAAGTCAAGATGCAGTAACTGATTTTATGATTTTACTGTATCGCGGAATAAATGGGCAAGATTCTGAGAAGTCACCATTTGGATTTTATGCTAGAAATGGAAAGTTTATAGAGACTTACATAACAACAAACAAAAAGACAGATGCAGGTGGAGATATAATCGGTTGTTTCTGCTTCTTGCAGATTGTGACGGAAGATTTGAATCAACCCTCTCAAGGACACAGGTCTAAATGCAGAGAAAGGATCTCGGAGTCTAAGGAGTTAGCTTATATACTTCAAGAGATGAAGAATCCTTTAAATGGTATCCGATTCACACACAAACTTTTGGAAAATACAGGCCTCTCCGAAAACCAGAAACAACTTCTTGACACTAGCGAAGCTTGTGAAAGACAAATAATGGCGATTATTGAGGATATAGAGTTAGGAAGTATTAACGAAGGCGCTTGGCAGCTAAACACGGAAGAATTTCTTCTGGGAAATATTTTAGATGCTGTTGTTAGTCAAGTAATGATGCTGATAAAAGGAAAGGATTTACAGATGTTTCGCGAAATACCAGACAAAATCCAAACACTTTCTCTGTACGGCGATCAAATTAGACTTCAGATGGTCTTGTCTGACATTTTGCACAATATAGTTAGCCATACACCGTCTCCAAACGGCTGGATAGAAATGAAGATTACACCTGGTTTAAAAATAATACAAGATGGGAATGAATTTATCCATTTAAAATTCAGAATGACACATTCTGGTCAAGGACTTCCTTCTGCTATTCTACACGATATGTATTACGGCGAGAATCAATGGACTACACAGGAAGGTCTAGGGCTATACATGTCAAGGAAAATCCTTAGTAGGATGAATGGTGATGTCCACTATGTAAGAGAACAAAATAAGTGCTATTTCCTCATTGACCTTGAACTAAGAACAAGAAAAGAAATGCAAAGGAATTTGAAAACAGAGACAAGCATGCTAGGTATAAGGGATGTGGAGGGTCATCTGTAA 3393 0.4008 MSFGSKEKLKGVSLSSSAESKMNTNKETEKTVAQYGLDAELLAEFEQSRVYGKSFEYSKTILDPPRLVSEEKMITYLSRIQRGGFIQPFGCLVVIEESTFRIIGHSENCVQLLGDIIGSEHFVGLIGVDATTLFTPPSGSSLVKAVASRDISRLNPIWVHARTTEKPFYAILHRIDVGVVIDLEPARSSTGPALSLSGTFQSQKMAVSAISRLQSCPREDISLLCDTVVEEVQKLTGYDRVMIYKFHEDDHGEVVSEIRRSDLESYLGLHYPSIDIPQAARFLFKQNRVRLIFDCDAKPVKVIQSHELKQPLCLVNSTLRSPHDCHKQYMANMGIIGSLVMAVVINEKDTTRLWGLLVCHHTSPHHVSFPVRHACEFVMQTFGMQLYMEIQLASQMAEKRILKTQTMLCDMLLRDAPFGIVTQSPSIMDLVKCDGAAMYYDEKCWLLGITPTKLQVKDIAEWLLSNYSDSTGLTTESLVDAGYPGATLLGDAVCGMASALINPRHILFWFRSHSAKEIQWGGAKHHPADKDDGGKMYPRTSFKAFLEVIKSKSLPWEISEINAIHSLQLIMQDLFQDTDNSSPKTLNDFEKSDAPIGGSHEISSIAIEMVRLIETAAVPIFGVDSEGLINGWNVKIAELTGLHTSEAMGKSLQNEVVHVDSHETLTNILRRALQGQDNKNVELKINRFVLHQEKEVVYLMVSSCISRDYTNAIVGVCFVGQDITFEKVIVKKFIKLEGDYKAIMHSLNPLIPPIFASDENACCSEWNVAMERVTGWKKDEVIGKMLLGEIFGSFCRLKSQDAVTDFMILLYRGINGQDSEKSPFGFYARNGKFIETYITTNKKTDAGGDIIGCFCFLQIVTEDLNQPSQGHRSKCRERISESKELAYILQEMKNPLNGIRFTHKLLENTGLSENQKQLLDTSEACERQIMAIIEDIELGSINEGAWQLNTEEFLLGNILDAVVSQVMMLIKGKDLQMFREIPDKIQTLSLYGDQIRLQMVLSDILHNIVSHTPSPNGWIEMKITPGLKIIQDGNEFIHLKFRMTHSGQGLPSAILHDMYYGENQWTTQEGLGLYMSRKILSRMNGDVHYVREQNKCYFLIDLELRTRKEMQRNLKTETSMLGIRDVEGHL 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02107 1130 Pfam GAF domain 220 390 IPR003018 GO:0005515
Mepo6g02107 1130 Gene3D - 201 551 IPR029016 -
Mepo6g02107 1130 Pfam His Kinase A (phospho-acceptor) domain 882 944 IPR003661 GO:0000155|GO:0007165
Mepo6g02107 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 611 719 IPR035965 -
Mepo6g02107 1130 SUPERFAMILY GAF domain-like 398 576 - -
Mepo6g02107 1130 Gene3D PAS domain 79 323 - -
Mepo6g02107 1130 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 992 1102 IPR003594 -
Mepo6g02107 1130 SUPERFAMILY GAF domain-like 201 386 - -
Mepo6g02107 1130 ProSiteProfiles PAS repeat profile. 739 791 IPR000014 -
Mepo6g02107 1130 PANTHER OS08G0260000 PROTEIN 74 941 - -
Mepo6g02107 1130 Pfam Phytochrome region 403 577 IPR013515 GO:0006355|GO:0009584
Mepo6g02107 1130 CDD HisKA 880 936 IPR003661 GO:0000155|GO:0007165
Mepo6g02107 1130 NCBIfam PAS domain S-box protein 612 727 IPR000014 -
Mepo6g02107 1130 CDD PAS 616 723 IPR000014 -
Mepo6g02107 1130 CDD HATPase_Phy-like 991 1104 IPR044767 -
Mepo6g02107 1130 MobiDBLite consensus disorder prediction 9 27 - -
Mepo6g02107 1130 SMART HisKA_10 880 944 IPR003661 GO:0000155|GO:0007165
Mepo6g02107 1130 SMART HKATPase_4 992 1106 IPR003594 -
Mepo6g02107 1130 ProSiteProfiles PAS repeat profile. 605 676 IPR000014 -
Mepo6g02107 1130 Pfam PAS fold 739 858 IPR013767 GO:0006355
Mepo6g02107 1130 Pfam PAS fold 608 723 IPR013767 GO:0006355
Mepo6g02107 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 80 188 IPR035965 -
Mepo6g02107 1130 Gene3D PAS domain 752 865 - -
Mepo6g02107 1130 Gene3D - 395 568 IPR043150 -
Mepo6g02107 1130 Gene3D - 922 1098 IPR036890 -
Mepo6g02107 1130 Pfam PAS fold 76 186 IPR013654 GO:0006355
Mepo6g02107 1130 FunFam Phytochrome 395 526 - -
Mepo6g02107 1130 MobiDBLite consensus disorder prediction 1 27 - -
Mepo6g02107 1130 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 940 1101 IPR036890 -
Mepo6g02107 1130 PRINTS Phytochrome signature 538 556 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 721 741 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 420 440 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 608 624 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 505 524 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 701 718 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 320 341 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 627 642 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 PRINTS Phytochrome signature 235 254 IPR001294 GO:0006355|GO:0009584
Mepo6g02107 1130 Gene3D PAS domain 608 724 - -
Mepo6g02107 1130 SMART gaf_1 220 400 IPR003018 GO:0005515
Mepo6g02107 1130 SMART pas_2 607 674 IPR000014 -
Mepo6g02107 1130 SMART pas_2 741 808 IPR000014 -
Mepo6g02107 1130 SUPERFAMILY PYP-like sensor domain (PAS domain) 753 855 IPR035965 -
Mepo6g02107 1130 FunFam Phytochrome 752 860 - -
Mepo6g02107 1130 ProSitePatterns Phytochrome chromophore attachment site signature. 320 329 IPR013516 -
Mepo6g02107 1130 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 220 380 IPR016132 -
Mepo6g02107 1130 PIRSF Phytochrome_conventional 8 1114 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Mepo6g02107 1130 FunFam Phytochrome 601 733 - -
Mepo6g02107 1130 ProSiteProfiles Histidine kinase domain profile. 887 1106 IPR005467 -
Mepo6g02107 1130 CDD PAS 750 858 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02107 Mepo-Chr6 25098448 25102530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g02107 11 1106 Histidine Kinase Gene Family AT4G18130 58.702 0.0 1359
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02107 K12123 - gmx:100808192 1753.03