Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g02035 ATGTGTACTGGGTGTAGGAACACCTTGCTTTACCCTAGAGGAGCAAGCAATGTTTGTTGTGGATTGTGCAACACAATTACAGCTGTTCTTCCTCCTGGAATGGAATTGTCACAACTTTATTGTGGAGGTTGTAGAACATTGCTAATGCACGCACGTGGAGCTACTACCGTGAGATGTTCCTGCTGTAACACTATAAATTCTGTACCAGGCAACTTCCCATTTCAAAAGGTCGCCAGGAAGGCTGGCCATTTAGGGAAAATGGGGTCAAGGCTCAACCTTTCAAAAGGGATTCCGTCGTCTCAAAAAGTGACCCTTTCCCTCAAAAAGAAACTCCAGAATGGTCTAGGTCAACACATCACCACATATTAG 369 0.4472 MCTGCRNTLLYPRGASNVCCGLCNTITAVLPPGMELSQLYCGGCRTLLMHARGATTVRCSCCNTINSVPGNFPFQKVARKAGHLGKMGSRLNLSKGIPSSQKVTLSLKKKLQNGLGQHITTY 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g02035 122 Pfam LSD1 zinc finger 41 65 IPR005735 -
Mepo6g02035 122 Pfam LSD1 zinc finger 2 26 IPR005735 -
Mepo6g02035 122 PANTHER PROTEIN LSD1 1 69 IPR040319 -
Mepo6g02035 122 NCBIfam zinc finger domain, LSD1 subclass 2 29 IPR005735 -
Mepo6g02035 122 NCBIfam zinc finger domain, LSD1 subclass 38 68 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g02035 Mepo-Chr6 24058017 24060424 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Mepo6g02035 zf-LSD1 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g02035 - K12191 gmx:100527656 129.413