Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01975 ATGTTGAATGAAACAAACTCGGACAACATGAATAAGAATTGTGAATTGTCTAAAAAGAAAATTGCTAGGGCTTGTGAGAGAAAGAATTCTGGAACAAAACTCAACGACACACGGAAGAGAAAGATGCATGAAATCAAGAAAGAAGAAAATCTGAACGGTTCTGAGTTCTCAAGACGCAGACTCGGAATTTTCAACAAAGCAATAGAGCTGTCTATTCTATGCCAATCAAAAACTGCAGTCCTTGTCAAATCGCCGGACAAGAACAAGCTCTATGCATGTGGCAACCCCTTTGACGCTGTCATTCAACGTTTTCTGACCGGACATATGATGGTCGAGAATGGGAAAAAGAAGAAAGAAGATGAGGAGATTGCTGAAACCCTAAGGCTTCAATATGAAGCACTTCAAGAAAAACTTGAAGAAGAGAATGATCATTTGAAAGCTGTCAAAGTCACTGAGGCACAAAAGAGTGATGTTAGTTTCCATGATTGGTGGAATAATTCTATTGATGATATGGATTTATCATCTCTTGAAGACTTTAAGACTTCTTTGGAGAGTTTCATGAATAATTTACGTGCAGCAAGCGCAGGAAAGTAG 594 0.3855 MLNETNSDNMNKNCELSKKKIARACERKNSGTKLNDTRKRKMHEIKKEENLNGSEFSRRRLGIFNKAIELSILCQSKTAVLVKSPDKNKLYACGNPFDAVIQRFLTGHMMVENGKKKKEDEEIAETLRLQYEALQEKLEEENDHLKAVKVTEAQKSDVSFHDWWNNSIDDMDLSSLEDFKTSLESFMNNLRAASAGK 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01975 197 SMART madsneu2 35 96 IPR002100 GO:0003677|GO:0046983
Mepo6g01975 197 Gene3D - 48 134 IPR036879 GO:0003677|GO:0046983
Mepo6g01975 197 ProSiteProfiles MADS-box domain profile. 56 84 IPR002100 GO:0003677|GO:0046983
Mepo6g01975 197 Coils Coil 117 151 - -
Mepo6g01975 197 SUPERFAMILY SRF-like 39 106 IPR036879 GO:0003677|GO:0046983
Mepo6g01975 197 PANTHER MADS BOX PROTEIN 39 190 - -
Mepo6g01975 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 55 92 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01975 Mepo-Chr6 23102782 23103375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01975 38 184 Type I MADS-box Gene Family AT5G60440 31.875 1.22e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo6g01975 SRF-TF 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01975 - - mtr:11443695 275.789