Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01957 ATGGGAAACACAAATTCTTCACACAACCTTCTCATAACCGTAACCGTTTTCGCCGTTACCGTCACCGTTTTCTTCATTCTCTACTTCATCCTCCGTCGCCGCCGTTTCTCTCCGTCATCCTCCTCCACTGTTAGAGTTTCTCCGGTGACGCCTACTTCATCAACTTCATCTTCCGTCGTTGATTCTCTTCCGATTTTCACATTCTCCTCCATCAAACGCCGTTCCTCCACTGTCATCTCCGGCGACTGTGCCGTTTGTTTATCAAAGTTCGAGCAAAACGATCTCCTTCGTCTTCTTCCTCTCTGCTGTCACGCATTTCATACTGAATGCATCGACGCTTGGTTATCGTCGAATCAAACCTGTCCGTTATGTCGATCATCCGTATTCGCTTCGGAATCAGAGATTATGAAGATTTTCCGTCCATCTTCCACTTCTTCCGGTAACAACAGCTTCCGTTTGGAGATAGGAAACATCAGTAACCGCCGTGAAGCAACCGTAACTGACAATAACAATAACAATAACAATGTCGCCGGAGAAACTGACCGGAGGACTTACTCCGTCGGCGCGTTCGAGTATTTCGTCGACGAGGAAGCTGAGATTCCAGTTGGAAACACTAATCGGAGAATATTTTCCGGTGAAAAAGATGATGCGGCGGTGATTGCGGTGGAGGTGGAGACTCCGGTGGCTTATCAGGCGAGTTTGATCGGTGAAAGTAACTGGTTGAAGGATTACGTTGATGGTTTATCAAGAGTGATGTCGTTTCCAGGTTCTGGAAGATTCTTTACTGGTAGTAGTAGACGAAACGACGTCGTAGCTGGTGTTGGAGATTTTGATGTTGAAGCTAATGCTAATGGTTTTGGTGAAGAGATTAGTGAGATGTTTAGGTGGATTTCAGGTGTTTAA 903 0.4607 MGNTNSSHNLLITVTVFAVTVTVFFILYFILRRRRFSPSSSSTVRVSPVTPTSSTSSSVVDSLPIFTFSSIKRRSSTVISGDCAVCLSKFEQNDLLRLLPLCCHAFHTECIDAWLSSNQTCPLCRSSVFASESEIMKIFRPSSTSSGNNSFRLEIGNISNRREATVTDNNNNNNNVAGETDRRTYSVGAFEYFVDEEAEIPVGNTNRRIFSGEKDDAAVIAVEVETPVAYQASLIGESNWLKDYVDGLSRVMSFPGSGRFFTGSSRRNDVVAGVGDFDVEANANGFGEEISEMFRWISGV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01957 300 CDD RING-H2_EL5-like 82 125 - -
Mepo6g01957 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 130 IPR013083 -
Mepo6g01957 300 FunFam E3 ubiquitin-protein ligase ATL6 47 131 - -
Mepo6g01957 300 ProSiteProfiles Zinc finger RING-type profile. 83 125 IPR001841 -
Mepo6g01957 300 SUPERFAMILY RING/U-box 59 131 - -
Mepo6g01957 300 SMART ring_2 83 124 IPR001841 -
Mepo6g01957 300 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 9 203 - -
Mepo6g01957 300 Pfam Ring finger domain 82 125 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01957 Mepo-Chr6 22862838 22863865 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01957 53 209 C3H Transcription Factor Family AT2G18650 30.516 3.84e-22 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01957 K10663 - gmx:100804962 290.426