Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01956 ATGATGTTCCATTTTCAGGGTGTGTCAAGACATTGTAGTCTTCTTGCTGTTCTTAGTGGTAAATCACATGATAGTAAACAAAAGCAGAAGCAGAAGCATGATGATGATGATGTTTCTGAGAATCAATTTTCGTCGTACCCCTTTCCGGAACTATCTTCGTCCGGGCGACTTGAGGTTAAAGTGTTGACTAAACCTACTTTCGATGAACTTGCTCGAGTTCTAGAACAACTGCAGCCAGATTTTGTTTACTTGCAAGGTCAGCAGTTAGATGATAGTGGAGAAATCGGGTCTCTTGTGTGGGAAGATTTTGACCTGTCTACCCCGGAAGTCTTGTGTGGATTATTTTCTTCCAAATTACCTAATACCGTGTATTTGGAAACTCCTAAGGGCGAAAAATTGGCAGAGGCACTACATTCTAAGGGAGTACCTTACACTATTTACTGGAAAAATGAATTTTCAACGTATGCAGCTTCACATTTTCATCAAGCTTTTTTCTCAGTGGCACAGAGTACATCCAGCCATACATGGGATGCTTTCCAACTTGCTCAGTCATCTTTTAGACTATACTGTGTGCAAAACGAGGTCATACCTCACAACAGTCAGAAGGGCAGCGGTAAGCTTGGGCCAAGAATTCTTGGGGAACCTCCTAACATTGAAGTTGGTCCATGTGAAGCAGACACGAAGGAAGAGGAAGAAGATTCACCTGAGACTAGTTCTTCTATAAAGATATATGATGATGATGTGAATACGAGATTTCTTCTTTGTGGATTTCCCTGCACAGTGGATGCGTGCTTATTGGGGTCATTAGAGGATGGACTCAATGCTCTCCTATGTACTGAAATACGGGGATGTAAACTTCAAAATCGGACAAGTGCTCCACCACCACCTCTTCAAGCAGCAACATTCTCACGCGGCGTGGTGACCATGCGCTGTGATATATCCACGTCTAGTTCTGCTCATATATCACTTTTGGTGTCCGGTAGTGCAGACGCTTGTTTCAATGATCAGCTTTTGGAGAATCATATTAAGAAAGAGCTCATTGAGAATAGTCAACTTATCCAGGCAATTTCTAGCCATGAACAAAATAAACTACCTTCATATGAGCCTCGAAGATCAGCTTCAGTAGCCTGTGGATCTAGTGTTTTTGAAGTTTGTATGCGTGTTCCTACATGGGCTTCGCAGGTTCTTAGACAACTTGCACCAAATGTGTCATACCGCTGCCTAGTTATGTTAGGCGTTGCTAGTATTCAAGGATTATCAGTTGCATCTTTTACTAAAGATGATGCAGAACGTTTTCTTTTCTTTTGTAATCGGCAGGAGAAAGATAACTGCTCCAAAGATATTGTTTTCTCTAGCCATCCTAGTTGGTTGATGCCTCCAGCACCTAGTCGAAAAAGATCCGAACCAGAATCATGCTCTAGAGTTAAATCTATCAATGCTAGTGGCGTGAAAGTTGAAGATAATGGAAGTGATAGGCAGAAATTAAGTTTTGCTGCAATGAGGCCAATCCCTCAGTCTCATCGCCAAAAGCTTCTCCCTTTTTCAGGATATTTTGAGGGAGAAAAATATGATGGAGACCGTGGAAAATCAAATCAGCCTCTTGTTCCAATTAAGCACAATGGTTTAGGTCCTCGTTCAGTTACAAACAGAAAATCTGTGTCAAACTCGTTTCAAGCTCACCAGATAATATCTTTGAATCCACTACCAATGAAAAAACATGGCTGCGACAGAGTTCCAATACGAGTTTGCTCAGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGGCATACTCGCCTCATTCCACAAGGTGGCCTTGCTGAGTTCCCTGATGCCGTTCTGAATGCTAAACGTCTGGATCTTTTTAACTTGTATAGGGAGGTGGTTTCAAGAGGAGGCTTTCATGTTGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACAGGTGTTGGCAATACACTCAAAAGGCATTACGAAACTTATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGCGAATGCTGCTTATTGTGTCACAGTAGCGCAGCAGGTGACTGGGTGAACTGTGGTATGTGTGGCGAGTGGGCTCATTTTGGTTGTGATAGGCGGCAAGGACTCGGAGCATTTAAGGACTACGCAAAAACTGATGGGCTGGAGTACGTTTGTCCACACTGCAGCATGTCAAATTTCAGTAAAAAATCGCAGAAAACTGCAAATGGTTATTAA 2280 0.4215 MMFHFQGVSRHCSLLAVLSGKSHDSKQKQKQKHDDDDVSENQFSSYPFPELSSSGRLEVKVLTKPTFDELARVLEQLQPDFVYLQGQQLDDSGEIGSLVWEDFDLSTPEVLCGLFSSKLPNTVYLETPKGEKLAEALHSKGVPYTIYWKNEFSTYAASHFHQAFFSVAQSTSSHTWDAFQLAQSSFRLYCVQNEVIPHNSQKGSGKLGPRILGEPPNIEVGPCEADTKEEEEDSPETSSSIKIYDDDVNTRFLLCGFPCTVDACLLGSLEDGLNALLCTEIRGCKLQNRTSAPPPPLQAATFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQLLENHIKKELIENSQLIQAISSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLSVASFTKDDAERFLFFCNRQEKDNCSKDIVFSSHPSWLMPPAPSRKRSEPESCSRVKSINASGVKVEDNGSDRQKLSFAAMRPIPQSHRQKLLPFSGYFEGEKYDGDRGKSNQPLVPIKHNGLGPRSVTNRKSVSNSFQAHQIISLNPLPMKKHGCDRVPIRVCSEEEFLKDVMQFLVLRGHTRLIPQGGLAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGMCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSMSNFSKKSQKTANGY 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01956 759 SMART ARID_2 579 682 - -
Mepo6g01956 759 Gene3D - 580 685 IPR036431 GO:0003677
Mepo6g01956 759 ProSiteProfiles ARID domain profile. 582 686 IPR001606 GO:0003677
Mepo6g01956 759 SUPERFAMILY ARID-like 583 697 IPR036431 GO:0003677
Mepo6g01956 759 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 686 750 IPR013083 -
Mepo6g01956 759 CDD PHD_ARID4_like 692 743 - -
Mepo6g01956 759 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 759 IPR042293 -
Mepo6g01956 759 MobiDBLite consensus disorder prediction 221 240 - -
Mepo6g01956 759 CDD ARID 584 682 - -
Mepo6g01956 759 Pfam ARID/BRIGHT DNA binding domain 585 682 IPR001606 GO:0003677
Mepo6g01956 759 SUPERFAMILY FYVE/PHD zinc finger 685 748 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01956 Mepo-Chr6 22852965 22860713 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01956 2 758 ARID Transcription Factor Family AT3G43240 64.737 0.0 966
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mepo6g01956 ARID 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01956 - - tpra:123911371 1376.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01956 6 22852965 22860713 Mepo6g01956 6 22852965 22860713 ECH