Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mepo6g01955 | ATGAGTGTCAAAACGACAACCACTACAAGAGATGTCGTTGTCGTTCCACCTTCAACTACGACGACAGAAATAATCGACGTTGAAACTTTTCAATTCTCTTCCCCCATCGCCACCACCACCTCCGTCGTCGTCAACCTCTCCGATATCGAAGACGATGATGATGATGACGTCAGAATTCTCAATTTCGTTCCCAAAAACACCTCTTTTGGAAAACGCAGAAGAATCAAACTCGAAAAAGGTGAATCATCAAAACAAAATTCAAATCCAAACGACGTGCCGTTTTTCTGTGAAATCTGCACAGAAACCAAAACAACAAAGGAAGCTTTTTTCATCACCGGTTGTAACCATGCTTATTGCTCTGATTGCGTCGTGCTTTACGTTCGTTCAAAAATTGAAGAAAATGTGATCAATGTACGGTGTCCTGTTAGTAGATGCAGTGGATTATTGGAAGCTGAGGAATGCCGGGGGATTTTACCTGTCGAGGATTTTGATCGATGGGGAAAGGCGTTATGCGAGGCGATGTTTGATGTTAATGAGAAATTTTACTGTCCTTTTCCGGATTGTTCTGCGCTTTTGATTAATGATGGGACGGAGACTGTTCTGCATTCGGAATGTCCGAATTGTAGGAGGTTGTTTTGTGCACAATGTAAGGTTCCGTGGCATGATGGGATCGAGTGTAGCGAGTTTCAGAAGCTGAATGCGGATGAGAGGGGGAAAGATGATGTTTTGTTGATGAAACTTGCTAAGGATCAGAAGTGGAGACGGTGTCCGAATTGTAGGTATTATGTCGCTAAGTCCGAGGGTTGCTTGTACATGAAATGCAGGTGTGGAATTGCTTTCTGTTACAACTGTGGAGTTCCCAACAAAAATACCAGCCATTACTGCAGCAACTGTAAACACTAA | 903 | 0.4308 | MSVKTTTTTRDVVVVPPSTTTTEIIDVETFQFSSPIATTTSVVVNLSDIEDDDDDDVRILNFVPKNTSFGKRRRIKLEKGESSKQNSNPNDVPFFCEICTETKTTKEAFFITGCNHAYCSDCVVLYVRSKIEENVINVRCPVSRCSGLLEAEECRGILPVEDFDRWGKALCEAMFDVNEKFYCPFPDCSALLINDGTETVLHSECPNCRRLFCAQCKVPWHDGIECSEFQKLNADERGKDDVLLMKLAKDQKWRRCPNCRYYVAKSEGCLYMKCRCGIAFCYNCGVPNKNTSHYCSNCKH | 300 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mepo6g01955 | 300 | SUPERFAMILY | RING/U-box | 237 | 299 | - | - | |
| Mepo6g01955 | 300 | FunFam | RBR-type E3 ubiquitin transferase | 91 | 177 | - | - | |
| Mepo6g01955 | 300 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 76 | 299 | IPR031127 | GO:0004842|GO:0016567 | |
| Mepo6g01955 | 300 | SUPERFAMILY | RING/U-box | 94 | 173 | - | - | |
| Mepo6g01955 | 300 | Gene3D | - | 224 | 300 | - | - | |
| Mepo6g01955 | 300 | ProSitePatterns | Zinc finger RING-type signature. | 114 | 123 | IPR017907 | - | |
| Mepo6g01955 | 300 | SMART | ring_2 | 96 | 143 | IPR001841 | - | |
| Mepo6g01955 | 300 | SUPERFAMILY | RING/U-box | 170 | 231 | - | - | |
| Mepo6g01955 | 300 | FunFam | RBR-type E3 ubiquitin transferase | 228 | 300 | - | - | |
| Mepo6g01955 | 300 | ProSiteProfiles | Zinc finger RING-type profile. | 96 | 144 | IPR001841 | - | |
| Mepo6g01955 | 300 | CDD | Rcat_RBR_unk | 252 | 288 | - | - | |
| Mepo6g01955 | 300 | Pfam | IBR domain, a half RING-finger domain | 179 | 226 | IPR002867 | GO:0008270 | |
| Mepo6g01955 | 300 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 179 | IPR013083 | - | |
| Mepo6g01955 | 300 | Pfam | Zinc finger, C3HC4 type (RING finger) | 96 | 141 | IPR018957 | GO:0046872 | |
| Mepo6g01955 | 300 | ProSiteProfiles | TRIAD supradomain profile. | 92 | 300 | IPR044066 | - | |
| Mepo6g01955 | 300 | CDD | BRcat_RBR_unk | 177 | 229 | - | - | |
| Mepo6g01955 | 300 | SMART | ibrneu5 | 236 | 298 | IPR002867 | GO:0008270 | |
| Mepo6g01955 | 300 | SMART | ibrneu5 | 164 | 226 | IPR002867 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mepo6g01955 | Mepo-Chr6 | 22839857 | 22844485 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mepo6g01955 | 96 | 287 | C3H Transcription Factor Family | AT2G19610 | 31.188 | 2.32e-22 | 94.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mepo6g01955 | K11975 | - | gmx:100807821 | 348.591 |