Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01953 ATGGGTCATGAAACTCCGAGAAAAAGAAATGGAAGAAGCGGCAATTCCCATTCGACGCTAGAGATAATCGACCTTGAAACTTTTCGCTTCTCCAGCAAGCGACCCATCTCCTCCGTCATCGACCTTTCCGATGACGAAGACGAAGACGTTAAGATCATCAATTTCATTCCCAAAACTATCCCTTCCGCAAAACGTAAAAGAAGCAACATTGAAAAAGGAGAGTCTTCAAACTCAAATAACACCCCGTTCGTTTGTGAAATCTGTACTGACACTAAAACAATGAAGGATGCTTTCTACATCAGCGGTTGCTCTCACGTATATTGCTCTGATTGCGTGGCCATGTACATCGGTTCCAAGCTTGAAGAAAACATCGTCAAAATTCAGTGTCCTTTTCCAGGGTGCAAAGGTTCCTTGGAGGCGGATTTTTGCCGTTCTATTCTTCCAGCCAAGGTTTTTGAACGGTGGGGTAAGGCGCTGTGTGAGGCTTTATTCGATGTTTCGAATAAATTCTATTGTCCATTTCCAGACTGTTCTGCGCTTCTGATCGATGATGGAATGGAGGCTGTTAGAAATTCAGAATGTCCTAATTGCAATAGGATGTTCTGTGCACAGTGTAAAGTTCCATGGCACGAAGGAATCGAATGCAACGAGTTTGAAAAGCTGAATGCGGATGAGAGGAAGAAAGAGGATGTCATGTTGATGCGCCTTGCTAAAAATAAGAAGTGGATGAGATGTCCCAAATGCAGAATTTATGTTGCTAGATCTATGGGCTGCAACTACATGCACTGCAGACCTTATGGTGGTGGTATGTTCATCTTTATGGCTGCACCACCCTCTTCCCCTCTGATGGGGTCTTTTAGTCGACGGCATCGCGTCGTCGTGACCTGTCTCTTAACTGTTTTGTCGCACCCACCATTGTGGGATGTTGGATCGTTGTTGCAGGTTCGGTTGAACTGTGTGATTTTATTGTTATGCCTTGAGATGTATTGTTGTGGTTATGTTTGA 1005 0.4418 MGHETPRKRNGRSGNSHSTLEIIDLETFRFSSKRPISSVIDLSDDEDEDVKIINFIPKTIPSAKRKRSNIEKGESSNSNNTPFVCEICTDTKTMKDAFYISGCSHVYCSDCVAMYIGSKLEENIVKIQCPFPGCKGSLEADFCRSILPAKVFERWGKALCEALFDVSNKFYCPFPDCSALLIDDGMEAVRNSECPNCNRMFCAQCKVPWHEGIECNEFEKLNADERKKEDVMLMRLAKNKKWMRCPKCRIYVARSMGCNYMHCRPYGGGMFIFMAAPPSSPLMGSFSRRHRVVVTCLLTVLSHPPLWDVGSLLQVRLNCVILLLCLEMYCCGYV 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01953 334 Pfam IBR domain, a half RING-finger domain 167 215 IPR002867 GO:0008270
Mepo6g01953 334 CDD BRcat_RBR_unk 166 218 - -
Mepo6g01953 334 SUPERFAMILY RING/U-box 225 263 - -
Mepo6g01953 334 ProSiteProfiles Zinc finger RING-type profile. 85 130 IPR001841 -
Mepo6g01953 334 Pfam Zinc finger, C3HC4 type (RING finger) 85 130 IPR018957 GO:0046872
Mepo6g01953 334 ProSiteProfiles TRIAD supradomain profile. 81 293 IPR044066 -
Mepo6g01953 334 SUPERFAMILY RING/U-box 158 220 - -
Mepo6g01953 334 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 50 276 IPR031127 GO:0004842|GO:0016567
Mepo6g01953 334 Gene3D - 170 217 - -
Mepo6g01953 334 ProSitePatterns Zinc finger RING-type signature. 103 112 IPR017907 -
Mepo6g01953 334 Gene3D - 218 271 - -
Mepo6g01953 334 SMART ibrneu5 153 215 IPR002867 GO:0008270
Mepo6g01953 334 SUPERFAMILY RING/U-box 80 162 - -
Mepo6g01953 334 FunFam RBR-type E3 ubiquitin transferase 80 166 - -
Mepo6g01953 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01953 Mepo-Chr6 22805776 22807226 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01953 20 264 C3H Transcription Factor Family AT2G19610 28.346 4.66e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01953 K11975 - gmx:100803898 308.145