Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01951 ATGGATCCTGAAGCAACAAGAAGAAGAAGCGTCAATGGCGTTCCCCCTTCGACGACAGAGGTGATCGACGTTGAAACTTTTCACTTCCCTGGTAAGCGAAAGATCTCTGCTGTCATTGACCTTTCCGACGACGAAGAAGAAGACGAGGATGTTATGATCCTCAATTTCAGTCCCAAAAATACAAAAGGAAAGAGAAGTTACAACATTGAAAAAGGAGAGTCTTCAAATCCAAACAACATGCCATTTGTTTGTGAAATCTGCACGGACACTAAAACAATGAAGGACGCTTTCTACATCGGCGGTTGCTCTCACGCGTATTGCTCTGATTGTGTGGTGAAATACATCAGTTCCAAGCTTGAAGATAACATCATCAACATTCAGTGCCCAGTTCCTGGGTGTAGCGGTTTGTTAGAAGCTGAGTTTTGCCGTTCAATTCTTCCTGTTGAGGTTTTTGAACGGTGGGGTAAGGCGTTGTGTGAGGCTTTGTTCGATGTTTCGGAAAAATTCTACTGCCCATTTGCAGACTGCTCAGCTTTACTGAATTTCAACGACGGAACCGAGACTGTTATAAAGAAAGAATGTCCTAATTGTAACAAGATATATTGTGCAAAATGTAAGGTTCCATGGCATGAAGGAATCGAATGCAGTGAGTTCGAGAAGCTGAACGCGGATGAGAGGGAGAAAGAAGATATTATGTTGATGAACCTTGCCAAGGATAAGAAGTGGAGGCGATGCCCTAATTGCAGAATTTATGTTGCAAAGTCTGAAGGCTGCAACAGCATGAAATGCAGGTGTAGTTGTAGGTTTTGTTACAATTGTGGAGTCAAATTACCCGTCGGCAGGTTATGCAGTTGTTACATCTATTCGGCTCAACAAGAGAGACTTATTCTTCCTAGATTTTTCACTAGTGCAGATTTCCCTAATGGTAACCCCAACTTCCCGACTCAACAACAACCACATCAACAAATTCCCACCAGAATTTTTACGCATAATGTTCAACAACATCATTTACAAATTTCTATCAGAGATAGACTTCAACAACAACAACAACAACAATTTCTCACCAGAATTTTAACGGGTGGAGTTCCCACTATTGGAAATTTTTCTAATGTGAATCCCGTCTATCCGTCTCGTAAGGAACAAATTCCTTCAAGAGTTTTTACAAATGGAGTTTCCTTCAATGGAACTTTTCATAACGGAAACACTGTCTATTCGACTCAACAACAAGAGCAGACTCCCTCCGTAAATTTTACAGGTGGAATTTCCAATATTGGAACCTTTCCAAATGGAAACTCTGTTTATCTGACTCAACAAGAACAAATTCATTCAAGAGTTTTTACAAGTGGAATTTCATCTAGTGGAACTTTTCGTAATGGAAACATTGTTCATCCGACTCAACGACAAGAACAAACTCCCTCCAGAGTTTTTACGGGTGGAATTTCCACTATTAGAGCTTTTCTTAATGGGAACTCAATCAATCCTACTCGACATATTCCTTCGAGAGTTTTTACAAGTGGAGTCTCTACTAGTGGAACTTCCTTTGAAGGGAACACCGTCAATCCAACTCAACGACATGAATAG 1581 0.4067 MDPEATRRRSVNGVPPSTTEVIDVETFHFPGKRKISAVIDLSDDEEEDEDVMILNFSPKNTKGKRSYNIEKGESSNPNNMPFVCEICTDTKTMKDAFYIGGCSHAYCSDCVVKYISSKLEDNIINIQCPVPGCSGLLEAEFCRSILPVEVFERWGKALCEALFDVSEKFYCPFADCSALLNFNDGTETVIKKECPNCNKIYCAKCKVPWHEGIECSEFEKLNADEREKEDIMLMNLAKDKKWRRCPNCRIYVAKSEGCNSMKCRCSCRFCYNCGVKLPVGRLCSCYIYSAQQERLILPRFFTSADFPNGNPNFPTQQQPHQQIPTRIFTHNVQQHHLQISIRDRLQQQQQQQFLTRILTGGVPTIGNFSNVNPVYPSRKEQIPSRVFTNGVSFNGTFHNGNTVYSTQQQEQTPSVNFTGGISNIGTFPNGNSVYLTQQEQIHSRVFTSGISSSGTFRNGNIVHPTQRQEQTPSRVFTGGISTIRAFLNGNSINPTRHIPSRVFTSGVSTSGTSFEGNTVNPTQRHE 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01951 526 Pfam IBR domain, a half RING-finger domain 236 276 IPR002867 GO:0008270
Mepo6g01951 526 Pfam IBR domain, a half RING-finger domain 167 215 IPR002867 GO:0008270
Mepo6g01951 526 SUPERFAMILY RING/U-box 226 288 - -
Mepo6g01951 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 167 IPR013083 -
Mepo6g01951 526 SUPERFAMILY RING/U-box 81 165 - -
Mepo6g01951 526 CDD Rcat_RBR_unk 241 274 - -
Mepo6g01951 526 CDD BRcat_RBR_unk 165 218 - -
Mepo6g01951 526 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Mepo6g01951 526 Gene3D - 212 360 - -
Mepo6g01951 526 ProSiteProfiles Zinc finger RING-type profile. 84 130 IPR001841 -
Mepo6g01951 526 Pfam Zinc finger, C3HC4 type (RING finger) 84 129 IPR018957 GO:0046872
Mepo6g01951 526 FunFam RBR-type E3 ubiquitin transferase 79 165 - -
Mepo6g01951 526 SMART ibrneu5 225 285 IPR002867 GO:0008270
Mepo6g01951 526 SMART ibrneu5 152 215 IPR002867 GO:0008270
Mepo6g01951 526 ProSiteProfiles TRIAD supradomain profile. 80 295 IPR044066 -
Mepo6g01951 526 SUPERFAMILY RING/U-box 158 220 - -
Mepo6g01951 526 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 58 333 IPR031127 GO:0004842|GO:0016567
Mepo6g01951 526 MobiDBLite consensus disorder prediction 502 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01951 Mepo-Chr6 22767180 22770852 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01951 84 275 C3H Transcription Factor Family AT2G19610 29.851 4.77e-21 93.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01951 6 22767180 22770852 Mepo6g01951 6 22767180 22770852 ECH