Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01949 ATGGCTCCGTGGTCGTCAAGCAGGAGAAGAAACAAAGCTCCGGCAGATGTAATCGACCTCGAATCATTCCGCTTGTCCGGCAAACGACCAATCTCTGCCGTCATCGACCTTTCTGACCAAGAAGATGACGATATTAAGATCATCAATTTCATTCCCAAAAAAACCCCTTATGGAAAGCGTCAAAGAAACAAGTTTGACAAAGGAGAGTCTTCAAATTCAAGTAACACACCCTTCGTTTGTGAAATCTGCACGGACACTAAAACAATGAAGGATGCTTTCTACATCAGCGGTTGCTCTCACGCTTATTGCTCCGATTGCATGGTATCATACATAGGTTCCAAACTTGAAGATAACATCGTCAATATTCGGTGTCCTTTTCCAAAGTGCAAAGGTTCGTTGGAAGCGGAGTTTTGCCGTTTTATTCTTCCGACTGAGGTTTTTGATCGCTGGAGTCAAGGGTTGTGTGAGGCTATGTTCGATGTTTCAGAAAAGTTCTACTGCCCCTTTGCAGACTGTTCTGCTCTTTTGATCAACGATGGAATGGAGGCTGTTAAAAACTCAGAATGTCCTAATTGTAATAGGATGTTTTGTGCACAATGTAAGATTCCATGGCATGAAGGAATCGAATGCAGCGAGTTTGAGAAGCTTAACGTGAACGAGAGAAAGAAGATGTTATGTTGA 681 0.4273 MAPWSSSRRRNKAPADVIDLESFRLSGKRPISAVIDLSDQEDDDIKIINFIPKKTPYGKRQRNKFDKGESSNSSNTPFVCEICTDTKTMKDAFYISGCSHAYCSDCMVSYIGSKLEDNIVNIRCPFPKCKGSLEAEFCRFILPTEVFDRWSQGLCEAMFDVSEKFYCPFADCSALLINDGMEAVKNSECPNCNRMFCAQCKIPWHEGIECSEFEKLNVNERKKMLC 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01949 226 ProSiteProfiles Zinc finger RING-type profile. 80 128 IPR001841 -
Mepo6g01949 226 FunFam RBR-type E3 ubiquitin transferase 75 161 - -
Mepo6g01949 226 SMART ibrneu5 148 210 IPR002867 GO:0008270
Mepo6g01949 226 SUPERFAMILY RING/U-box 75 159 - -
Mepo6g01949 226 Pfam IBR domain, a half RING-finger domain 164 210 IPR002867 GO:0008270
Mepo6g01949 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 162 IPR013083 -
Mepo6g01949 226 SUPERFAMILY RING/U-box 156 215 - -
Mepo6g01949 226 Gene3D - 165 215 - -
Mepo6g01949 226 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 217 IPR031127 GO:0004842|GO:0016567
Mepo6g01949 226 ProSitePatterns Zinc finger RING-type signature. 98 107 IPR017907 -
Mepo6g01949 226 ProSiteProfiles TRIAD supradomain profile. 76 226 IPR044066 -
Mepo6g01949 226 Pfam Zinc finger, C3HC4 type (RING finger) 80 125 IPR018957 GO:0046872
Mepo6g01949 226 CDD BRcat_RBR_unk 161 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01949 Mepo-Chr6 22736577 22737257 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01949 80 215 C3H Transcription Factor Family AT2G19610 30.345 3.54e-13 66.2