Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01947 ATGGCTCCGGAGACAAGAGCAAGAAAGAAAAGAAACATAGCTCCGGCAGAGGTAATTGACTTCAAATCGTTCCGCTTGTTCGGAAAACGACCAATCTCCGATGTCATCGAATCATCCCGCTTGTCCGGAAAACGACCAATCTCCGATGTCATCAATCTTTCTGATGAAGAAGACAACGACATTAATATCTTCAACTTCACTCCGAAAAATAACCCATATACAAAGCCTAAAACAAACAACTTAGAAAAAGGAGAGTCTTCAAATTCAAGTATCACTCCATTCGTTTGCGAAATATGCACGGACACGAAAACAATGAAGGATGCTTTCTACATCAGCGGTTGCTCTCACGCTTATTGCTCCGATTGTGTGGTAAAGTACATCAATTCCAAACTTGATGATAACATCGTCAATATTCGGTGTCCTGTTATAGAGTGTGAAGGTTTGTTGGATCCACAGTTTTGCGGACCCATTCTTTCAGACGAGGTTTATGATCGGTGGGGTCTTCTGTTCTGTGAGGCTTTGTTCAAAGTTTCGAAAAAGTTCTATTGCCCCTTTGCAGACTGTTCTGCTCTTTTGATCAACGACAGAATGAACCCTGTTAAAAATTCAGAATGTCCTAATTGTAATAGGATGTTTTATGCACGATGTATGGTTCCACAGCACGAGGTTTGTGCACGATGTAGGGTTCCACGGCAACAAGGAATTGAATGCAGTGAGTTCGAGAAGCTGAATATGTTCATGTGCGTTGCTAAGGATACGCAATGGAGGCGATGTCCCAAATGCAGAATTTATGTTGCCAAATCCGAGGGCTCCATCAACATGACATGCAGGTCGTCTTTTCTATTCAATATTCTCTTGCTTATATCCTTACTTTTTGAATAA 882 0.415 MAPETRARKKRNIAPAEVIDFKSFRLFGKRPISDVIESSRLSGKRPISDVINLSDEEDNDINIFNFTPKNNPYTKPKTNNLEKGESSNSSITPFVCEICTDTKTMKDAFYISGCSHAYCSDCVVKYINSKLDDNIVNIRCPVIECEGLLDPQFCGPILSDEVYDRWGLLFCEALFKVSKKFYCPFADCSALLINDRMNPVKNSECPNCNRMFYARCMVPQHEVCARCRVPRQQGIECSEFEKLNMFMCVAKDTQWRRCPKCRIYVAKSEGSINMTCRSSFLFNILLLISLLFE 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01947 293 ProSiteProfiles TRIAD supradomain profile. 92 293 IPR044066 -
Mepo6g01947 293 ProSiteProfiles Zinc finger RING-type profile. 96 144 IPR001841 -
Mepo6g01947 293 Pfam Zinc finger, C3HC4 type (RING finger) 96 141 IPR018957 GO:0046872
Mepo6g01947 293 SUPERFAMILY RING/U-box 93 174 - -
Mepo6g01947 293 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 178 IPR013083 -
Mepo6g01947 293 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 60 276 IPR031127 GO:0004842|GO:0016567
Mepo6g01947 293 SMART ibrneu5 164 227 IPR002867 GO:0008270
Mepo6g01947 293 FunFam RBR-type E3 ubiquitin transferase 92 177 - -
Mepo6g01947 293 ProSitePatterns Zinc finger RING-type signature. 114 123 IPR017907 -
Mepo6g01947 293 SUPERFAMILY RING/U-box 239 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01947 Mepo-Chr6 22728109 22728990 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01947 96 277 C3H Transcription Factor Family AT2G19610 25.000 1.03e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01947 K11975 - gmx:100803898 239.195