Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01895 ATGGGGACGACGAATAAAATCAAAACCCAAGTGGTGAAAAACATAGACAAAGAAGAGAACAAAAAAACTACCAACAAAGTAGTAAATGAGAAGAAAGCTATTGTTAATGGAACCAACAAAGGAGACAATAACAGTAACAACAACAACAACAATGTTTTTGCTTCTTGTTCCTTTTCTAGCCTTGGTCTTCACCAACCCTTATGTGACCAACTTCGTGAAAGAATGGGTTTTGAAGGTCCAACATTAGTTCAAGCTCAAGCTATTCCTGTTGTTCTATCTGGCCGTCATGCACTGGTTAATGCTGCGACGGGCACAGGGAAGACTGTTGCATACCTGGCTCCAATAATTCATCACTTGCAGAGTTATGATAAACGAATTCAGCGCTCCGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAATTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTATTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGGGAAAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATTGCAACTCCCGGGCGCCTTTTAGATCACTTGAAGAACACATCATCATTCGTGTACACAAATTTGCGCTGGATAATTTTCGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGAAAAGAGATACAAGAAATACTAAATCTTTTAGGTTCAATGAAGACAGGGCACGATGACCAAGAGAATGGAGTTTCAAGACCTTCTAAATTTCAAAGACAGAACCTGCTTTTATCAGCGACCTTAAATGAGAAAGTAAACCACCTTGCGAAAATTAGCTTAGAGGATCCTGTGATGATTGGTATTGATGATAAATCAATGGAACCAACGTCAAAAATTAGATTTGATAACTCAGATTGTGATGAAGACAATGAAGAAACACATTCCAGTAAAGTACCAGCAGTTGGAGCTTATAAAGTGCCCGAACAGTTGATTCAGAGATACATGAAGGTGCCTTGTGGATCACGGCTTGCTATACTTCTTTCTATTCTAAAGCATCTTTTTGAAAGGGAACCTTCACAGAAGGTTGTGCTATTCTTTTCAACATGTGATGCGGTGGACTTTCACTATTCATTGTTAACCGAATTCCTTTTCTCACCGTTTCCACAAACCGCAGAAGGGAACAGACCAATGTTTCTTGGATGTAAAACTCTTCGGCTACATGGTAATATGGAACAAGAGGACAGGACAACCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCCCTTCTTTTGTCTACTGATGTTTCTGCCAGAGGCTTAGATTTTCCAAATGTTAGATGCATAATACAATACGATTCTCCTGGAGAAGCTACTGAATATGTGCACAGAGTTGGGAGAACTGCTCGACTTGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAACCATCTGAAATAGACTATTTACAAGACTTGGAGAAACATGGTGTCTCACTAGCAGAGTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTGTCTGCACAGAAGAACAACACAAAGAAATCTGTTTTCATAGACATGCATCCATGGATCCTGTCTCTCCAGAAGGCACTTGAGTCCTGCATCTCGTCCAAGCCCAAAATGGAAGAACTTGCCAAGAGAGCATTTTGCTCTTGGGTCCGTGCATACACAGCGCATCGTGGGGAGCTGAAAAGAATATTTATGGTTAAGAAACTTCACTTAGGGCACGTAGCAAAAAGCTTTGCATTGAAACAAATACCCTCCTTAGTTGGAAAGTCTTTCCAAAACCAAACTAAGAAGAGAAAGAGATTCGAGAAGAAAAATGGGTCGTCGAATAAGAGAAAAGTTGCACGGCGTGTGACATAA 1881 0.4051 MGTTNKIKTQVVKNIDKEENKKTTNKVVNEKKAIVNGTNKGDNNSNNNNNNVFASCSFSSLGLHQPLCDQLRERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTVAYLAPIIHHLQSYDKRIQRSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTSSFVYTNLRWIIFDEADRILELGFGKEIQEILNLLGSMKTGHDDQENGVSRPSKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKSMEPTSKIRFDNSDCDEDNEETHSSKVPAVGAYKVPEQLIQRYMKVPCGSRLAILLSILKHLFEREPSQKVVLFFSTCDAVDFHYSLLTEFLFSPFPQTAEGNRPMFLGCKTLRLHGNMEQEDRTTSFQAFKTEKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPSEIDYLQDLEKHGVSLAEYPLLKVLDSFPLSAQKNNTKKSVFIDMHPWILSLQKALESCISSKPKMEELAKRAFCSWVRAYTAHRGELKRIFMVKKLHLGHVAKSFALKQIPSLVGKSFQNQTKKRKRFEKKNGSSNKRKVARRVT 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01895 626 SMART helicmild6 371 469 IPR001650 -
Mepo6g01895 626 SMART ultradead3 76 298 IPR014001 -
Mepo6g01895 626 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 490 IPR027417 -
Mepo6g01895 626 SMART DUF4217_3 531 596 IPR025313 -
Mepo6g01895 626 Pfam DEAD/DEAH box helicase 82 272 IPR011545 GO:0003676|GO:0005524
Mepo6g01895 626 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 347 516 IPR001650 -
Mepo6g01895 626 Gene3D - 5 287 IPR027417 -
Mepo6g01895 626 PANTHER RNA HELICASE 24 600 - -
Mepo6g01895 626 FunFam RNA helicase 16 286 - -
Mepo6g01895 626 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 212 220 IPR000629 -
Mepo6g01895 626 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 56 85 IPR014014 GO:0003724
Mepo6g01895 626 Pfam Helicase conserved C-terminal domain 346 469 IPR001650 -
Mepo6g01895 626 Gene3D - 338 621 IPR027417 -
Mepo6g01895 626 CDD DEADc_DDX31 67 285 - -
Mepo6g01895 626 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 88 284 IPR014001 -
Mepo6g01895 626 MobiDBLite consensus disorder prediction 602 626 - -
Mepo6g01895 626 CDD SF2_C_DEAD 328 478 - -
Mepo6g01895 626 Pfam Domain of unknown function (DUF4217) 533 593 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01895 Mepo-Chr6 21911987 21918425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01895 76 500 Eukaryotic Initiation Factors Gene Family AT1G72730 25.467 6.14e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01895 K14806 - gmx:100805157 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01895 6 21911987 21918425 Mepo6g01895 6 21911987 21918425 ECH