Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01890 ATGAAGGCTCCTTCTAATGGTTACTTGCCTAATTCTGGTGAAGGTGAAAGGAAGGCCATCAATTCAGAGTTATGGCATGCTTGTGCCGGGCCATTGGTTTCTATACCGCCTGTTGGAAGCCTTGTAGTTTACTTTCCTCAAGGACATAGTGAACAAGTTGCAGCATCTATGCAAAAGGAGGCAGACATCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATCTGCATGCTTCACAATGTTGCCCTGCATGCTGATCCTGAAACCGACGAGGTCTATGCACAGATGACCCTTCAACCTGTAAATAAATATGACAAGGAAGCAATGCTGGCTTCAGACATGGGTCTCAAACAAAACCAACAACCCTCAGAATTCTTTTGCAAAACTCTAACAGCTAGTGATACTAGCACTCACGGTGGATTTTCAGTGCCTCGTAGAGCTGCTGAGAAAATATTCCCACCTCTGGACTTCTCAATGCAACCGCCAGCTCAGGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGCGTCTTTGTTAGCACAAAAAGGCTCTTTGCTGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTCTTAGGTATAAAGAGATCCAGTAGACAGCAACCGGCACTATCTTCATCGGTAATATCAAGTGACAGCATGCATATCGGCATTCTTGCTGCTGCGGCTCATGCTGCTTCGAATAACAGTCCATTTACTATATTTTATAATCCAAGGACTAGCCCCTGTGAATTTGTGATTCCGTTGGCCAAGTATAATAAAGCTCTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACAGAGGATTCAGGAGTACGCAGATATATGGGCACAATCACTGGGATCAGTGACTTGGATCCTGTCCGCTGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGACGAATCAACAGCTGGTGAGCGCCCAAGTAGAGTTTCAATTTGGGATATTGAACCAGTTGTGACTCCTTTCTACATTTGTCCACCTCCGTTTTTTAGGCCGAAGTTCCCGAAGCAACCAGGAATGCCAGAAGATGAGTCTGTAATCGAAAATGCATTCAAGAGAGCTATGCCATGGCTTGGAGATGAACTCGGCATGAAGGATACCTCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGTATGCAGCAGAATAATAATCAGTTTTCCGCTGCTCAATCAGGGCTTTTATCTCCATCCATGCTTTCTTCAAATGCAATGCATGGTAACCTTAACACTGATGACCCATCCAAGATACTGAACTTCCAATCCCCTGCTGCGCTCTCTGCTCCAAGTCTTCAATTTAATAAACCTAATTTACCGAACCAAATCAATCAATTGCAACAGCCCTCGGCCTCGTGGTCTCAGCAACAGCAACAGCAACAGCAGCAGAAGATGCAGTCGTTGTTGCCAATGCCGTTAAATCAGCTGCAGCAGCAGCAGCAGAGGCAGCAGCAGCTGGCTGGACCACAAAATCTGCCGCAGCCACAGCAACAACAGCCTCAACTGACTCAACAGAATCCGCAGCAGCCTCAACAGCAGCAACAACACCAACAGCCGTGTCAAAATACGACTATGAATAACGGCACAATTGGTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCAGTAACCTACTCTCAGCTTCAGCAACAGTTACTCGCTGGAAGTATCCAATCCCATCAAAATTTCCAATCAGCTGGCAAGAATGGATTGATAATGACATCCTTACCACAAGACTCGCAATTCCAGCAACAAATAGACCAGCAACAAGCTGGTCTCTTACAGCGGCAGCAGCAACAGAATCAGTTGCAGCAATCTTCGTTACAGTTATTGCAACAAAGCATGTTGCAAAGAGCACCACAACAACCACAAATGTCTCAAATTTCGCCGCAAAACACCTCAGACCAACAGCAACAGTTGCAGTTGTTACAGAAGCTGCAACAGCAGCAGCAGCAGCAACAACAACAACAGCAACAGCAGCAACAACAGCAGCAGCAACCACTTTCCACATCTTCCCCACTTTTGCAGTCTCAGCTTCTGCCGCAACAAAGCCAGCAATTGCCTCAGCAGCCTATGTCCCAGCATCAGACCCAACAGCTTGGAAACAACGGATTCTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCACCTCTCATGCATCCGCAGCAGCTCCCTGTGAACCATCTCCAGAATACACAGAAATCACCTACAAACACTAGAGCTCCTTCTGCTTTTACAGATGGAGATGCCCCATCATGCTCAACTTCGCCGTCTACTAATAACTGTCAGACATCACCTCCAAACCCTCTGAAAAGAAATCAACCAGACACATTTGGAGGGCCTTCAATGGTTGAAACCACGAATAATCTAATGCAGGAGCTTCAAAGTAAGTCTGATATGCAGAGCAAACATGAATTACACGACGTTAAAGGACCCGACAAGCAAAAGCACAAAGGTGCAATCAATGATCATATGGAAGCTTCTTCTGGAACATCGTATGGTATTGATCCTGGTAACATCCACCAGAACTTCCCACTTTCTAACTTCTACATGGATGGTGATGTACACTCACAACAACCTAGAAGTAATTTACCATTTGCTTCTAACCTTGATGGATTAACACCTGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGCTGTCTAATTATGGCGGTGCTCCTAGAGACATTGAAACCGAGCTGTCCACTGCTGATATTAGTTCACAGTCGTTTGGGGTACCAAACATGTCTTTTAAGCCAGGATGCTCAAATGAAATTCCTATTGCCGATACTGGGGTTTTGAATAATGGGTTATGGTCTAATCAAAATCAACGAATGCGAACATATACTAAGGTGCAAAAATGTGGTTCAGTCGGAAGATGTATTGATGTCACCCGTTACAAAGGGTATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGTATCGAAGGACAGCTAGAAGATCCTGTAAGGGTTGACTGGAAACTAGTGTATGTGGATCACGAAAACGACATTCTTCTTGTCGGCGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGCCGAGGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATAATATTCCAATCACTAATCAAGCTTGTAGTGGATCAGAAAGTGGCAATGCATGGAGAGCACAGTATGATGATAACTCTGCAGCTTCATTTAATCGATAA 3375 0.4424 MKAPSNGYLPNSGEGERKAINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADIIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESVIENAFKRAMPWLGDELGMKDTSSSIFPGLSLVQWMSMQQNNNQFSAAQSGLLSPSMLSSNAMHGNLNTDDPSKILNFQSPAALSAPSLQFNKPNLPNQINQLQQPSASWSQQQQQQQQQKMQSLLPMPLNQLQQQQQRQQQLAGPQNLPQPQQQQPQLTQQNPQQPQQQQQHQQPCQNTTMNNGTIGSNQIPNQCVQQPVTYSQLQQQLLAGSIQSHQNFQSAGKNGLIMTSLPQDSQFQQQIDQQQAGLLQRQQQQNQLQQSSLQLLQQSMLQRAPQQPQMSQISPQNTSDQQQQLQLLQKLQQQQQQQQQQQQQQQQQQQQPLSTSSPLLQSQLLPQQSQQLPQQPMSQHQTQQLGNNGFSMEKLLNNNYSSPLMHPQQLPVNHLQNTQKSPTNTRAPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDTFGGPSMVETTNNLMQELQSKSDMQSKHELHDVKGPDKQKHKGAINDHMEASSGTSYGIDPGNIHQNFPLSNFYMDGDVHSQQPRSNLPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNEIPIADTGVLNNGLWSNQNQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPVRVDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYNIPITNQACSGSESGNAWRAQYDDNSAASFNR 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01890 1124 Coils Coil 636 656 - -
Mepo6g01890 1124 MobiDBLite consensus disorder prediction 772 827 - -
Mepo6g01890 1124 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mepo6g01890 1124 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Mepo6g01890 1124 MobiDBLite consensus disorder prediction 772 815 - -
Mepo6g01890 1124 MobiDBLite consensus disorder prediction 850 881 - -
Mepo6g01890 1124 MobiDBLite consensus disorder prediction 850 866 - -
Mepo6g01890 1124 FunFam Auxin response factor 124 228 - -
Mepo6g01890 1124 MobiDBLite consensus disorder prediction 471 575 - -
Mepo6g01890 1124 Pfam AUX/IAA family 993 1082 IPR033389 -
Mepo6g01890 1124 FunFam Auxin response factor 289 361 - -
Mepo6g01890 1124 MobiDBLite consensus disorder prediction 657 682 - -
Mepo6g01890 1124 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 573 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mepo6g01890 1124 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Mepo6g01890 1124 CDD B3_DNA 125 217 IPR003340 GO:0003677
Mepo6g01890 1124 Gene3D - 991 1085 - -
Mepo6g01890 1124 Gene3D - 289 360 - -
Mepo6g01890 1124 Coils Coil 678 708 - -
Mepo6g01890 1124 SMART B3_2 126 228 IPR003340 GO:0003677
Mepo6g01890 1124 SUPERFAMILY CAD & PB1 domains 1009 1074 - -
Mepo6g01890 1124 Gene3D - 124 227 IPR015300 -
Mepo6g01890 1124 ProSiteProfiles PB1 domain profile. 996 1080 IPR000270 GO:0005515
Mepo6g01890 1124 FunFam Auxin response factor 991 1085 - -
Mepo6g01890 1124 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01890 Mepo-Chr6 21851357 21859025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01890 1 489 B3 DNA Binding Superfamily AT1G19220 81.800 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mepo6g01890 AUX_IAA 1e-08 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01890 K14486 - gmx:100804628 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01890 6 21851357 21859025 Mepo6g01890 6 21851357 21859025 ECH
Mepo1g00525 1 4976505 4982939 Mepo6g01890 6 21851357 21859025 PCT