Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01806 ATGGCGGTGAATCTCACCGCGAACGCTATTCCGGCGATAATCGCCGGCGACGTCGACGCAAAGCCGCTACTTCAAGTTCTCGACATTGCAACAATCGTAAGCACCAAAAACTCTCACCAACAGCGTTACCGTCTTCTTCTCTCCGACGCCGTTTCCTCTCATCACGCTATGCTCGCTGCTCAACTCAACGACCGAGTCAATTCCGGTCGAGTTAAGCAAGGTTCCATTGTTCAGCTTCTCGATTACATTTGCACTCCGCTTCAGAATCGCAAGATTATTATGGTGCTTAACATGGAAACCATAATACCTGATTGTGAAATCATTGGGAATCCAAAGTCATTTGTGGATTCAGAGTTACCTGTTCAGAAAGCATTGCCTGATAACACTGTGGCTGGTTCGTCCAGAAGTATTAATAATAATTTGGCTGCTCAAAATGCTGGTAGTAATGGGCAGAATTTCAGGCCAACAGTTCAACCTCAAAACCAACCTCCTCCGCTTTACAACAATAATTTTGCTGCTCCAAATGCTGGTAGTAATGGGCAGAATTTCAGGCCAACAGTTCAACCTCCATACCAACCTCCTCCGCTTTACAAAGGTCGTGGTGCAGTTATGAAAAATGAGGCGCCAGCACGTGTAATACCTATAGCTGCTTTAAATCCCTATCAGGGTAGGTGGGCCATCAAGGCAAGGGTTACTGCAAAAGGGGATTTGCGCCGCTATAACAATGCTCGTGGAGATGGAAAAGTCTTCTCGTTTGATCTCCTTGATTCTGATGGAGGTGAAATACGGGTAACTTGCTTTAATGCTGTTGTTGACCGTTTCTATGAAGCAATTGAGGTTGGTAAAGTTTACTTGATATCGAAAGGTAGCTTGAAACCTGCACAGAAGAATTTCAACCATTTGAAGAATGAATGGGAAATTATGCTGGATTTAAATTCAACGATTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAGACAACAATTCTCCTTCAGACCTATCAGTGACATTGAGATTGTTGAGAGTAACGCTATCCTTGATGTTATTGGGGTTGTGACATCTGTAAATCCTTCAGTTCCCATCTTAAGGAAGAATGGAATGGAAACACTGAGAAGGGTTTTGAATCTAAAGGACAATTCTGGCAAGAGTGTTGAGCTAACACTTTGGGGTGAATTCTGCAACAGGGAAGGACAAGAGCTTCAAGAGATGGTGGATGCTGGGGTTTTCCCTGTTTTAGCAGTAAAGGCTGGGAAAGTTAATGAGTTCAGTGGAAAGTCTATAGGCTCTATTTCTACTACACAGCTTTTCATAAATCCTGATTTCCCTGAGGCTCAGACCTTAAGAAACTGGTTTGATCAAGTTGGGAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATCACTCATGGAGGACCCAAAAATGAGATACGCAAAACTGTGTCTCAAATTAAAGATGAAGGTCTAGGGCGTTCAGGCAAGCCAGACTGGATAACAATGAGGGCAACCGTATCATTCATGAGGACCGATCCATTTTGTTACACAGCTTGCCCTCTGATGATTGGAGATCGACCGTGCAATAAGAAAGTGACGAAGTCAGGAGACACAAAATGGCAGTGTGATAGATGCAACCAGGAGTTTGAGGAATGTGATTATCGTTACCTTCTCCAAGCTCAAATCCAGGATCATTCAGGATTAACTTGGGTAACTGCTTTCCAGGAAGCAGGGGAGGAGATTATGGGGTACTCAGCAAAAGATCTGTATGTGTTGAAGTATGAACAGGAGGATGATGAGAAGTTTGGAGATATAATCAAGAGTAGACTCTTCAATGAGTTTGTGTTTAGGCTGAAAATCAAAGAGGAGTTATATAATGAGGAACAGAAGGTGAAGATTACAGTAGTTAAGGCAGATAAGGTGAATTATTCTGCAGAGAGTAGGTACATGCTTGATTTTATTTCCAAGTTCCGTAGGCAGTGA 1977 0.4305 MAVNLTANAIPAIIAGDVDAKPLLQVLDIATIVSTKNSHQQRYRLLLSDAVSSHHAMLAAQLNDRVNSGRVKQGSIVQLLDYICTPLQNRKIIMVLNMETIIPDCEIIGNPKSFVDSELPVQKALPDNTVAGSSRSINNNLAAQNAGSNGQNFRPTVQPQNQPPPLYNNNFAAPNAGSNGQNFRPTVQPPYQPPPLYKGRGAVMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYEAIEVGKVYLISKGSLKPAQKNFNHLKNEWEIMLDLNSTIELCPDEDGSIPRQQFSFRPISDIEIVESNAILDVIGVVTSVNPSVPILRKNGMETLRRVLNLKDNSGKSVELTLWGEFCNREGQELQEMVDAGVFPVLAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQTLRNWFDQVGKDSASLSISKDITHGGPKNEIRKTVSQIKDEGLGRSGKPDWITMRATVSFMRTDPFCYTACPLMIGDRPCNKKVTKSGDTKWQCDRCNQEFEECDYRYLLQAQIQDHSGLTWVTAFQEAGEEIMGYSAKDLYVLKYEQEDDEKFGDIIKSRLFNEFVFRLKIKEELYNEEQKVKITVVKADKVNYSAESRYMLDFISKFRRQ 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01806 658 Gene3D - 3 115 IPR012340 -
Mepo6g01806 658 Pfam OB-fold nucleic acid binding domain 226 306 IPR004365 GO:0003676
Mepo6g01806 658 FunFam Replication protein A subunit 211 320 - -
Mepo6g01806 658 Pfam Replication protein A OB domain 335 439 IPR031657 -
Mepo6g01806 658 SUPERFAMILY Nucleic acid-binding proteins 329 456 IPR012340 -
Mepo6g01806 658 MobiDBLite consensus disorder prediction 144 186 - -
Mepo6g01806 658 CDD RPA1_DBD_C 481 654 IPR047192 -
Mepo6g01806 658 PANTHER REPLICATION FACTOR A 1, RFA1 225 631 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mepo6g01806 658 MobiDBLite consensus disorder prediction 144 187 - -
Mepo6g01806 658 Pfam Replication factor-A C terminal domain 497 647 IPR013955 -
Mepo6g01806 658 Gene3D - 211 321 IPR012340 -
Mepo6g01806 658 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mepo6g01806 658 NCBIfam replication factor-a protein 1 (rpa1) 4 654 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mepo6g01806 658 Gene3D - 464 656 IPR012340 -
Mepo6g01806 658 SUPERFAMILY Nucleic acid-binding proteins 212 324 IPR012340 -
Mepo6g01806 658 CDD RPA1_DBD_B 346 453 - -
Mepo6g01806 658 SUPERFAMILY Nucleic acid-binding proteins 478 655 IPR012340 -
Mepo6g01806 658 FunFam Replication protein A subunit 324 462 - -
Mepo6g01806 658 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Mepo6g01806 658 CDD RPA1_DBD_A 214 317 - -
Mepo6g01806 658 FunFam Replication protein A subunit 4 115 - -
Mepo6g01806 658 FunFam Replication protein A subunit 463 655 - -
Mepo6g01806 658 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Mepo6g01806 658 Gene3D - 324 463 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01806 Mepo-Chr6 20519819 20524330 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01806 24 654 Core DNA Replication Machinery Family AT2G06510 67.141 0.0 875
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01806 K07466 - gmx:100792409 1009.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01806 6 20519819 20524330 Mepo6g01806 6 20519819 20524330 ECH