Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01799 ATGTTCCTCTTCGACCCTCCCAGTGACGAAGAAATTGAACACTCCAATCCTGAATCAGTAGAGGAATCAGAAGAAGAGCGAGGTAAATCAGAATCAGAATCAGGAGCAGAAGAGAAAGAAGAAGAGTACAAAGAACCGCGAGTTTCAAAGAAGAAAACACAGTCTCCATGGAACTTCTCAAAATACTCGGAATCAGTAACCGAAGAACATGCTCGCAGGAGTACTACCTCTGTAGACGACAAAATATATGCCGTTAGACAACGTGCCATGCCCATTGTTGCTTTGCCCGACACCGATGACTACAGTAGCTCTGACTCAGAACCCGATAAACAAGAAGATTATAGACTGGAAGAAGATGGAGAAGAGGGTAATGCTGGTAGTGACAACAAGCCCTTTTTTGCTCCTTCTGATGGAACCTCTTTTAGTGCTGATTCATTCTTGCAACTCAATTTGTCTCGCTCTTTACTCCTGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCGGCTTGTATACCATTAGCATTGACTGGTCGTGATATATGTGGAAGCGCCATTACAGGATCGGGAAAGACAGCTGCATTTGCGCTACCTACTTTAGAGCGGTTGCTGTTCCGTCCAAAAGGTGTGCATGCAATAAGGGTTCTTATTCTTACTCCAACCAGAGAGTTGGCTGTCCAAGTTCACAGTATGATAGAGGAGCTTGCTAAATTTACTGATAATATACGGTGTTGCCTGATTGTCGGTGGTGTGCCAACGAAGGGGCAAGAGGCTGCCTTGAGATCAAGGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATTGACCATTTGCGCAATTCTATGTCGGTAGATTTGGATGATCTCGCTGTTTTAATCCTTGATGAAGCTGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCAGGAACTTGTTCGTGTGTGTCCCAAAAAAAGGCAGACCATGCTGTTTTCAGCAACCATGACCGAGGAGGTTGATGATCTTATTAAACTTTCCCTGTCAAAACCCGTGCGTCTTTCTGCTGATCCATCCGCAAAACGGCCAGCATCCTTGACTGAGGAGGTGGTTAGAATAAGAAGAATGCGTGAAGTCAATCAGGAAGCAGTTCTCCTTGCAATGTGCACCAAAACATTTACCTCTAAAGTGATCATTTTCAGTGGAACAAAGCAAGCGGCACATAGGCTGAGGATTATATTTGGATTATCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAGGCCCAACGTCTTGATGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGCCTTGACATTATTGGTGTTCAAACAGTTATCAATTTTGCATGTCCTCGTGATCTTACCAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGGAGAGCGGGATCTGCTGTCACATTTGTTACTGATAGTGACCGATCACTTCTAAAAGCTATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTCAAGTGGTCTCAAGCAATTGAGCAAATGGAGGATCAAATTTCTGAAGTACTTCAAGAAGAGAGGGAAGAAATGGTCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAGGGATGAGATCTTCTCCCGCCCCAAAAGAACCTGGTTTGTTACAGAGAAGGAGAAGAAGCTTTCAGCCAAAGCAGCAAAGGCATCCTTGGATAAGGAAGAGGGTTCTTCTCAGAAGGTGGTTAGTGCCGAGCAAGCTGAAGACTTTAAAATGAAGGAAAAGAGGAAGCGAGAGCGAGAGAAAAATTTGCCTAGAAAGAAGCGCAGAAAGTTGGAAGCTGCTAGAGAGATGTTGGAGGATGAGGAGCAGGATGACAAGCCAAAAGATAAAGGGACAGATAAGAATGATAAGGGTGGAATGACACTTGTTGATCTTGCATACCGACGTGCAAAAGCAGTAAAGGCCGTCAAGAGAGCACTAGATTCTGGAAAGGTTGTGAAGAAGCCTCAAAAGAAAACTAATAAATCTAATCCTTCGCAAAAGACTTCTTCAAGGACAGAAAAGATGTGGGAGGTATTCCAGACTGACATGAACGATAAAAAGCCGAAACAGAGAGGTTCTGGAGTAGGAAAGGTCAAGAAATCGTTCAAAAGCAAGTCAAGGTACAAGAGAAAGTAG 2256 0.4441 MFLFDPPSDEEIEHSNPESVEESEEERGKSESESGAEEKEEEYKEPRVSKKKTQSPWNFSKYSESVTEEHARRSTTSVDDKIYAVRQRAMPIVALPDTDDYSSSDSEPDKQEDYRLEEDGEEGNAGSDNKPFFAPSDGTSFSADSFLQLNLSRSLLLACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKGVHAIRVLILTPTRELAVQVHSMIEELAKFTDNIRCCLIVGGVPTKGQEAALRSRPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIQELVRVCPKKRQTMLFSATMTEEVDDLIKLSLSKPVRLSADPSAKRPASLTEEVVRIRRMREVNQEAVLLAMCTKTFTSKVIIFSGTKQAAHRLRIIFGLSGLKAAELHGNLTQAQRLDALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGRAGSAVTFVTDSDRSLLKAIAKRAGSKLKSRIVAEQSILKWSQAIEQMEDQISEVLQEEREEMVLRKAEMEATKAENMIAHRDEIFSRPKRTWFVTEKEKKLSAKAAKASLDKEEGSSQKVVSAEQAEDFKMKEKRKREREKNLPRKKRRKLEAAREMLEDEEQDDKPKDKGTDKNDKGGMTLVDLAYRRAKAVKAVKRALDSGKVVKKPQKKTNKSNPSQKTSSRTEKMWEVFQTDMNDKKPKQRGSGVGKVKKSFKSKSRYKRK 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01799 751 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Mepo6g01799 751 SMART ultradead3 163 365 IPR014001 -
Mepo6g01799 751 Pfam Helicase conserved C-terminal domain 382 485 IPR001650 -
Mepo6g01799 751 SMART helicmild6 400 485 IPR001650 -
Mepo6g01799 751 Pfam DEAD/DEAH box helicase 168 339 IPR011545 GO:0003676|GO:0005524
Mepo6g01799 751 CDD DEADc_DDX27 155 351 - -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 7 51 - -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 681 751 - -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 698 717 - -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 718 732 - -
Mepo6g01799 751 Gene3D - 111 352 IPR027417 -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 733 751 - -
Mepo6g01799 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 505 IPR027417 -
Mepo6g01799 751 Gene3D - 359 537 IPR027417 -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 94 134 - -
Mepo6g01799 751 CDD SF2_C_DEAD 362 494 - -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 593 668 - -
Mepo6g01799 751 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 524 IPR001650 -
Mepo6g01799 751 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 350 IPR014001 -
Mepo6g01799 751 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 296 304 IPR000629 -
Mepo6g01799 751 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 57 705 - -
Mepo6g01799 751 Coils Coil 523 563 - -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 1 77 - -
Mepo6g01799 751 MobiDBLite consensus disorder prediction 631 663 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01799 Mepo-Chr6 20450127 20457435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01799 100 502 Eukaryotic Initiation Factors Gene Family AT3G13920 32.039 1.31e-47 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01799 K13181 - gmx:100776684 983.786