Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01797 ATGAAGCCATTTCTCTCTTTGAATCATCCTGATACCGAGTTCAATTGCTCGCAAGTTGATCATAATCACTCAATGGCTCAAGCTCATGCTCATTATCCTTATAGTGATCCAATTTTCTCTGGTTCGTTAGTTGCTTACGCACCGCATGCTGTTAATCAACCCCAAATGTTGCCTCAGATGATGGGATTAGCATCCACTAGAGTTGCATTACCACTTGATCTTGCACAAGATGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGCGACAATCACGAGCTAAGCTTGAGGCACAGAACAAACTCATCAAAAATCGTAAAGTATGTTCCATGCTTTGA 351 0.4131 MKPFLSLNHPDTEFNCSQVDHNHSMAQAHAHYPYSDPIFSGSLVAYAPHAVNQPQMLPQMMGLASTRVALPLDLAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKNRKVCSML 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01797 116 ProSitePatterns NF-YA/HAP2 subunit signature. 81 101 IPR018362 GO:0003677|GO:0016602
Mepo6g01797 116 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 79 111 IPR001289 GO:0003700|GO:0006355
Mepo6g01797 116 SMART cbf3 75 115 IPR001289 GO:0003700|GO:0006355
Mepo6g01797 116 Gene3D - 76 114 - -
Mepo6g01797 116 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 10 111 IPR001289 GO:0003700|GO:0006355
Mepo6g01797 116 ProSiteProfiles NF-YA/HAP2 family profile. 76 116 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01797 Mepo-Chr6 20417512 20420161 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01797 19 111 CCAAT-HAP2 Transcription Factor Family AT1G17590 50.526 2.98e-21 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mepo6g01797 CBFB_NFYA 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01797 K08064 - gmx:100793856 170.629