Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01794 ATGGAACTTGCTGGTGATGGAACTCCGTTTGACCCACGTACCGTTGAAGCTGTTTTCCGTGACTTCAAGGGCCGTAGAGCTGGTTTGATTAAAGCTCTCACCACTGATGTTGAAGATTTTTACCAGCAGTGTGACCCTGAAAAGGAGAATCTTTCTCTGTATGGATATCCTGGCGAATTATGGGAAGTCACTTTACCTGCTGAAGAAGTTCCTCCTGAACTTCCAGAACCTGCATTGGGCATCAACTTTGCTAGGGATGGGATGCAAGAAAAGGACTGGCTATCTTTAGTTGCTGTTCACAGTGATACATGGCTTCTCTCTGTGGCTTTCTACTTCGGCGCAAGATTTGGCTTTGATAAAGCCGACAGGAAACGCCTTTTCACTTTGATTAATGATCTGCCAACAATATTTGAGGTTGTGACTGGATCTGCTAAGAAACAGACCAAGGAAAAACCATCTGTCTCAAGTCACAACAGCAACAAGTCAAAGTCAGGCTCAAAAGCGCGTGGATCTGAACTGGCAAAGTATTCAAAGCCGCCAGCAAAAGAAGATGATGAGGGAGTGGATGACGAAGAGGAGGATCAAGGGGAATGCGCTGCATGCGGTGAAAGCTATGTATCTGCATCAGATGAGTTCTGGATCTGCTGTGACGTATGTGAGAAGTGGTATCATGGAAAATGTGTGAAGATCACTCCTGCCCGGGCTGAGCACATCAAGCAGTACAAGTGTCCTGCATGTAACAATAAGAGAGTCCGGCCTTGA 762 0.4619 MELAGDGTPFDPRTVEAVFRDFKGRRAGLIKALTTDVEDFYQQCDPEKENLSLYGYPGELWEVTLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDKADRKRLFTLINDLPTIFEVVTGSAKKQTKEKPSVSSHNSNKSKSGSKARGSELAKYSKPPAKEDDEGVDDEEEDQGECAACGESYVSASDEFWICCDVCEKWYHGKCVKITPARAEHIKQYKCPACNNKRVRP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01794 253 FunFam PHD finger alfin-like protein 189 248 - -
Mepo6g01794 253 PANTHER CPG BINDING PROTEIN 11 252 IPR045104 GO:0006355|GO:0042393
Mepo6g01794 253 MobiDBLite consensus disorder prediction 147 190 - -
Mepo6g01794 253 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 252 IPR013083 -
Mepo6g01794 253 Pfam PHD-finger 198 248 IPR019787 -
Mepo6g01794 253 SUPERFAMILY FYVE/PHD zinc finger 187 250 IPR011011 -
Mepo6g01794 253 SMART PHD_3 197 247 IPR001965 -
Mepo6g01794 253 MobiDBLite consensus disorder prediction 147 167 - -
Mepo6g01794 253 Pfam Alfin 14 142 IPR021998 GO:0006355|GO:0042393
Mepo6g01794 253 ProSitePatterns Zinc finger PHD-type signature. 198 246 IPR019786 -
Mepo6g01794 253 CDD PHD_AL_plant 198 249 IPR044104 -
Mepo6g01794 253 ProSiteProfiles Zinc finger PHD-type profile. 195 249 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01794 Mepo-Chr6 20388975 20392669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01794 3 252 Alfin-like Transcription Factor Family AT3G42790 68.775 6.68e-111 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo6g01794 Alfin 1.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01794 K26274 - rcu:8272513 404.831