Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01715 ATGTGCAATATATCCATGATACCAACTTATCGTTATTCTGCATCTTCTCCTCCTATGCCTTTTTTTGATCTAAATAATGAAGATCACAGTCACCATCTCTTCACTACTAATCAGCAAGACACTTCTTCATCTTCTTCTCTATCATATTCTATACTCTTCAACCAAAATCAAGATCAAACAAGATCTTATTCTTGGGAATCAAACCACATACAAAGTGATGGTCTAGAGGTTAAGAAGTTTGTACCTTCTAGTGAATCATGGGATCATCATGAAGTGGAAAAGGATGAAAAAGATTGGAAGAAAGAAGATGAGAATGAAATTTTTAGGGATGAGGGTAGAATTTCAATGAAGTGGATGCCATCAAAGAAGAGAATGATTAAGAGGATGATGGAAGATCAAAGGGCTTCTGAGCAAGAATTTGAGAAACAAATTAAGCAATTATCTGTATCACCTGATCTAGTAGGAACTGAGATTAGTAGCAACAACAATTTTTCAAACAACAACACTGTTAGGGTTTGTACTGATTGCCACACAACTAAGACCCCTCTCTGGAGAAGTGGACCAACTGGTCCCAAGTCACTTTGCAATGCCTGTGGGATTCGACAAAGAAAAGCGAGACGCGCCCTTGCAGCAGCTGCAAATGGTGAGACTCTTGCGGTGGCAGAGAAACCATATGTGAAGGGAAAGAAGTTGCAAGTCAAAAGGAAAAGGTCAAAAACTGATCAATGTGCATCACAATTGAAAAGGAAGGGTAAAAGTGAAAACAAGTGTAATAATTTTGAAGATTTGATAACAAGTTGGAGCAACAACTTGGCTTCCCATCAAGTTTTCCCTCAAGATGTGAAGGAGGCTGCTATTCTACTCATGGCTTTATCTTCTGGCTTACTTAATGGATTTCCTTCTGATGAATGCTAA 915 0.3836 MCNISMIPTYRYSASSPPMPFFDLNNEDHSHHLFTTNQQDTSSSSSLSYSILFNQNQDQTRSYSWESNHIQSDGLEVKKFVPSSESWDHHEVEKDEKDWKKEDENEIFRDEGRISMKWMPSKKRMIKRMMEDQRASEQEFEKQIKQLSVSPDLVGTEISSNNNFSNNNTVRVCTDCHTTKTPLWRSGPTGPKSLCNACGIRQRKARRALAAAANGETLAVAEKPYVKGKKLQVKRKRSKTDQCASQLKRKGKSENKCNNFEDLITSWSNNLASHQVFPQDVKEAAILLMALSSGLLNGFPSDEC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01715 304 FunFam GATA transcription factor 21 167 251 - -
Mepo6g01715 304 SMART GATA_3 167 218 IPR000679 GO:0006355|GO:0043565
Mepo6g01715 304 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Mepo6g01715 304 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 6 297 - -
Mepo6g01715 304 Gene3D - 163 256 IPR013088 GO:0006355|GO:0008270
Mepo6g01715 304 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Mepo6g01715 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 166 208 - -
Mepo6g01715 304 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Mepo6g01715 304 CDD ZnF_GATA 172 200 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01715 Mepo-Chr6 19256982 19259196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01715 49 298 C2C2-Gata Transcription Factor Family AT4G26150 34.448 1.87e-28 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo6g01715 GATA 9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01715 - - psat:127136613 336.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g00436 1 4184767 4186872 Mepo6g01715 6 19256982 19259196 PCT