Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01681 ATGGAGAACATTGGTGATGAGTACAATCATTACTGGGAGACCAACATGTTCTTCCAAACCCAAGAGCTTGATAGCTGGGGATTAGATGAAGCTTTTTCAGGATATTATGATTCAAGCTCCCCAGATGGTGCAGCATCATCAGGAGTTTCATCTAAGAACATTGTCTCTGAGAGGAATAGGAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGAGCAGTGGTCCCAAACATTAGCAAGATGGATAAAGCTTCAATTATTAAGGATGCTATTGAGTACATACAACACTTGCATGGGCAAGAGAAGATTATTCAAGCTGAGATAATGGAACTTGAATCTGGGATGCCTAATAATATTAATCCAAGCTATGATTTTGATCAAGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAGTTATATGATTCTGTCAGTTCAAGAAACTTTCCAATTGAAGTCCTTGAGCTTAGGGTTACATACATGGGAGAGAATACAATGGTAGTGAGCTTGACATGTAACAAAAGGACAGACACAATGGTAAAATTGTGTGAAGTTTTCGAATCTTTGAAGCTAAAAATTATTACTGCCCATATCACCTCTTTTTCAGGCAGGCTTTTGAAGACAGTCTTCATTGAGGCAAATGAGGAAGATAAAGATCAATTGCAAAGGAATATCCACACAGCCATTGCAGCACTTAATGACCCTCTAAGCCCTATGAGCATCTAA 735 0.3891 MENIGDEYNHYWETNMFFQTQELDSWGLDEAFSGYYDSSSPDGAASSGVSSKNIVSERNRRKKLNERLFALRAVVPNISKMDKASIIKDAIEYIQHLHGQEKIIQAEIMELESGMPNNINPSYDFDQELPVLLRSKKKRTDQLYDSVSSRNFPIEVLELRVTYMGENTMVVSLTCNKRTDTMVKLCEVFESLKLKIITAHITSFSGRLLKTVFIEANEEDKDQLQRNIHTAIAALNDPLSPMSI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01681 244 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Mepo6g01681 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Mepo6g01681 244 Coils Coil 214 234 - -
Mepo6g01681 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 114 IPR036638 GO:0046983
Mepo6g01681 244 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 229 - -
Mepo6g01681 244 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 45 114 - -
Mepo6g01681 244 SMART finulus 54 103 IPR011598 GO:0046983
Mepo6g01681 244 SUPERFAMILY ACT-like 166 234 IPR045865 -
Mepo6g01681 244 Gene3D - 49 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01681 Mepo-Chr6 18815363 18822803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01681 1 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 66.055 9.85e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo6g01681 HLH 4.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01681 - - gmx:100817978 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01681 6 18815363 18822803 Mepo6g01681 6 18815363 18822803 ECH