Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01680 ATGACTGAACTTACAAAATTCAGCGTCCTATGCAGCCTCTTAACATGGACACAACGAACAAAATCACCGGCGAAGAAACGCGCGAAGTTCCGGAAGTTTCTGGACAATTTCTGCACTGATCGGAACTATTTTCCGGCCATTCGACTCATTCTACCTAACCTTGATCGTGAACGTGGTTCTTATGGCCTTAAAGAATCTGTTCTTGCTACTTCGCTTATTGATGCTCTTGGAATGGCGAAAGACTCGCAGGATGCTCTTAGGCTTGTTAATTGGAGGAAAGGTGGAGCGAAAACTGGTGCTAATGCCGGTAATTTCGCGCTTGTCGCGGCCGAGGTGCTGCAGCTTAGGCAAGGTACTGCTTCAGGTGGACTGACAATAAAGGAGTTGAATGACTTGCTTGATCAATTGTCTTCGAGCGAAAACAGGGGTGAGAAGACTTTGGTTCTTTCAACCCTTATCCAAAAGACAAATGCGCTGGAAATGAAGTGGATCATCATGATAATCCTCAAAGATTTGAAGCTCGGAATTAGTGAAAGAAGCATTTTTCATGAATTTCATCCAGATGCTGAAGACTTGTTCAATGTTACGTGTGACTTAAAACTAGTTTGTGAGAAGCTAAGGGATCGGAACCAACGTCATAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAATTAGCTAAGAGAGTTGCTAACGCAGCTGACGCATGGAAGAAGCTTCATGGTAAGGAAGTGGTTGCTGAGTGCAAATTTGACGGTGATCGCATTCAAATTCATAAAAATGGAACAGAGATACATTTTTTCTCAAGGAACTTTATTGATCATTCTGAATATGCTCATGGGATGTCAGAAATCATAATTCAAAACATTCTTGTGGATAGATGCATACTTGATGGTGAAATGTTGGTCTGGGATATATCCCTGAATCGATTTGCTGAGTTTGGCTCTAATCAGGAAATAGCCAAGGCAGCTAGGGATGGGCTTGAGAGTAATAGACAGTTATGCTATGTGGCATTTGACATCCTTTATTTTGGAGATACTAGTGTAATTCATCAAACATTGAAGGAGCGGCATGAGATTTTACGTAAAGTTGTTAAGCCATTGAAAGGTCGTTTTGAAATTTTACTACCTAATGGTGGTATCAACAGTCATCGGTCTTCTGGTGAACCATGTTGGTCGTTTATTGCCCACAATGTGGAGGAAGTTGAAAGATTTTTCAAAGAAACCATTGAAAATAGAGAGGAGGGAATTGTAGTAAAAGACCTCAGCTCCAAATGGGAACCTAGTGACCGCAGTGGAAAATGGCTAAAGTTGAAGCCTGATTACATTCATGCTGGCTCTGATCTGGACGTACTTATCATAGGTGGCTACTATGGTTCCGGACGACATGGGGGAGAGGTTGCTCAATTCTTGGTGGGCCTTGCAGAGCGTCCATCACCAAATACACATCCCAAGCGATTTATCTCCTTATGCAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGAAGCAGTAGTGACCAAACTAAAACCTTACTTCAGAAAGTATCCAAAGACGAGCCCGCCAAGTTTTTATCAAGTTACTAATCATTCCAAAGAAAGACCTGATGTGTGGGTCGATAGCCCTGAAAAATCAATTATTCTGTCTATAACCAGTGACATCCGAACCATAGAATCAGAGGCATTCGCTGCACCTTACTCTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGACAAGGATTGGCATGAATGCCTTGATGTACAATCATTTATAGAATTGGTGCAATCTGGCAACGGTACCACACAGAGGAATACAGAATATGGGAGCAACAAGGACAGTAAACCAAAACGCATGAAATCCTCTCTAAGGGGAGAAAAGAAAAACATGTCTATTGTTCCCTCTCATTTAAGTCAGACTGATGTTTCTAGTGTTACGGGAGGTTCCTTAATGTTTTCAAATATGATGTTCTACTTTGTTAATGTCCCTCCATCTCATTCTCTAGAGTCCTTCCACAAATTAGTTGCTGAGAATGGGGGCACTTTCTCAATGAATTTGAATAACGCAGTCACTCATTGTGTTGCAGCAGACAGCAAAGGGTTTAAATTTGAAGCAGCAAAACATCGTGGTGATATCATTCATTATACTTGGGTATTAGATTGCTGTGCACAAAAGAAGCTCATCCCCTTACATCCGAAGTACTTCTTTTTTCTTTCTGAATTGACCAAGAAGAAGTTACAAGAAGATATTGATGAGTTCTCGGACTCTTACTACTTGGATCTTGACCTTGGAGACATCAAACAGCTCTTAAGTAATATCAATAGGTCACAAGATGTCAGTACTGTCGACCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTATCTTTAATGGATGCTCCATTTATTTCCGCACCACAATGCCATCATTGAAAGAAGATTGGCAAATTCTACTGGAACTTTCCTCGAAGAGATTCAAGGTTGAAGTTCTCATGGGTGGTGGAAAAGTCACATCTAATATCAACTCCGCAACTCATGTGGTGACCTTGTTCTTACCAAGTTGTCATACCAACTGTGAAGACGAAATACAGAGTAGTTTCACTTCAGTTGAGAGAAAACTTCTTGGAAGAAAGAGGTTGCATATAATTAATTCCAAGTGGTTAGAAGATTGTTTAAACAGTTGCCAAAGATTATCAGAAGACACTTATAGCATTAAGCCCTATGGAATAGAAGAGTCAACTGCTGAGGATCGTGAACATGACTTGGCGGTAGATGCTCATCTGATCAAAAAAGATAATGTAGAAGACCAAAATGTATCCATCTCTAACAAGGGAAATAAACAGAGTAGTGTAAAAGCTGCTTCTGAAGACAGTTTAACTTTGGCATCCCAAGCGAAGGTTGGACCAAGGAAAAGAGGAAGACCTCCAGGCAGAGGTATTACAAAAATAAAAACAGACACAAATCAAGCTCGAAGAGTACGATCACAAATTGCGAAAAAGCGTGCTAAAATATCTGAATATGAATCAGATGAAAGTGATTCTCTTGATAAAAGACCATACCAGAAAGAGGCTGACAATGCAGAAGGAAGTCTTGATTTTCACTTCGTACGTTCACAACCACATGAGACTGAAAAAACTCATAATATCCAAGGTACTGAAGGAGTAGAAAGTTCTGAACAAAACAAGGGAATCAGGCTAGAGGATTTCAAGGACAACCAACATGAAAATATGTTTGTTCCCGAAATTGAAATGAAAGATGCGGACAATGACCAAAGTAGTCAGATGACTGAGAAACTTGAAATTATGACTGATCCTGTACAGGCAATGTTACTTGACATGATTCCTGGCCTTTCTATGAACAAAGTTGAGCAACCTAGGAATCGTCATGTCGAGGTAGAGAAGCCACCAGAAATCTCTAATGAAGAGCCTTCTTCAACTACAAAGAAAAAGAAAGTTAGCTTCAAGGCCATCGCTGGTGACTTTCTAAAAGATTTGTAG 3507 0.4063 MTELTKFSVLCSLLTWTQRTKSPAKKRAKFRKFLDNFCTDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDALGMAKDSQDALRLVNWRKGGAKTGANAGNFALVAAEVLQLRQGTASGGLTIKELNDLLDQLSSSENRGEKTLVLSTLIQKTNALEMKWIIMIILKDLKLGISERSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAADAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHGMSEIIIQNILVDRCILDGEMLVWDISLNRFAEFGSNQEIAKAARDGLESNRQLCYVAFDILYFGDTSVIHQTLKERHEILRKVVKPLKGRFEILLPNGGINSHRSSGEPCWSFIAHNVEEVERFFKETIENREEGIVVKDLSSKWEPSDRSGKWLKLKPDYIHAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLAERPSPNTHPKRFISLCRVGTGLSDDELEAVVTKLKPYFRKYPKTSPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEAFAAPYSLRFPRIDRVRYDKDWHECLDVQSFIELVQSGNGTTQRNTEYGSNKDSKPKRMKSSLRGEKKNMSIVPSHLSQTDVSSVTGGSLMFSNMMFYFVNVPPSHSLESFHKLVAENGGTFSMNLNNAVTHCVAADSKGFKFEAAKHRGDIIHYTWVLDCCAQKKLIPLHPKYFFFLSELTKKKLQEDIDEFSDSYYLDLDLGDIKQLLSNINRSQDVSTVDHYRKKYCPKDKWSIFNGCSIYFRTTMPSLKEDWQILLELSSKRFKVEVLMGGGKVTSNINSATHVVTLFLPSCHTNCEDEIQSSFTSVERKLLGRKRLHIINSKWLEDCLNSCQRLSEDTYSIKPYGIEESTAEDREHDLAVDAHLIKKDNVEDQNVSISNKGNKQSSVKAASEDSLTLASQAKVGPRKRGRPPGRGITKIKTDTNQARRVRSQIAKKRAKISEYESDESDSLDKRPYQKEADNAEGSLDFHFVRSQPHETEKTHNIQGTEGVESSEQNKGIRLEDFKDNQHENMFVPEIEMKDADNDQSSQMTEKLEIMTDPVQAMLLDMIPGLSMNKVEQPRNRHVEVEKPPEISNEEPSSTTKKKKVSFKAIAGDFLKDL 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01680 1168 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Mepo6g01680 1168 ProSiteProfiles BRCT domain profile. 795 908 IPR001357 -
Mepo6g01680 1168 MobiDBLite consensus disorder prediction 940 965 - -
Mepo6g01680 1168 MobiDBLite consensus disorder prediction 602 627 - -
Mepo6g01680 1168 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo6g01680 1168 Gene3D DNA ligase/mRNA capping enzyme 220 443 - -
Mepo6g01680 1168 CDD Adenylation_DNA_ligase_IV 214 445 IPR044125 GO:0005524
Mepo6g01680 1168 Gene3D BRCT domain 795 908 IPR036420 -
Mepo6g01680 1168 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 5 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo6g01680 1168 MobiDBLite consensus disorder prediction 1122 1154 - -
Mepo6g01680 1168 Pfam BRCT domain, a BRCA1 C-terminus domain 652 734 IPR001357 -
Mepo6g01680 1168 SMART BRCT_7 651 727 IPR001357 -
Mepo6g01680 1168 SMART BRCT_7 797 898 IPR001357 -
Mepo6g01680 1168 FunFam DNA ligase 444 603 - -
Mepo6g01680 1168 ProSiteProfiles ATP-dependent DNA ligase family profile. 329 478 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mepo6g01680 1168 FunFam DNA ligase 1 218 - -
Mepo6g01680 1168 SUPERFAMILY Nucleic acid-binding proteins 449 598 IPR012340 -
Mepo6g01680 1168 Gene3D - 445 602 IPR012340 -
Mepo6g01680 1168 Coils Coil 993 1013 - -
Mepo6g01680 1168 Pfam ATP dependent DNA ligase C terminal region 466 582 IPR012309 GO:0003910|GO:0006281|GO:0006310
Mepo6g01680 1168 PANTHER DNA LIGASE 4 5 1160 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Mepo6g01680 1168 Gene3D BRCT domain 664 778 IPR036420 -
Mepo6g01680 1168 NCBIfam ATP-dependent DNA ligase 61 597 IPR000977 GO:0003910|GO:0005524|GO:0071897
Mepo6g01680 1168 CDD BRCT_DNA_ligase_IV_rpt1 653 739 - -
Mepo6g01680 1168 ProSiteProfiles BRCT domain profile. 649 737 IPR001357 -
Mepo6g01680 1168 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Mepo6g01680 1168 MobiDBLite consensus disorder prediction 940 1022 - -
Mepo6g01680 1168 CDD OBF_DNA_ligase_IV 448 590 - -
Mepo6g01680 1168 MobiDBLite consensus disorder prediction 1044 1065 - -
Mepo6g01680 1168 SUPERFAMILY BRCT domain 653 737 IPR036420 -
Mepo6g01680 1168 MobiDBLite consensus disorder prediction 612 627 - -
Mepo6g01680 1168 Pfam ATP dependent DNA ligase domain 226 441 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Mepo6g01680 1168 MobiDBLite consensus disorder prediction 1002 1022 - -
Mepo6g01680 1168 FunFam DNA ligase 664 778 - -
Mepo6g01680 1168 FunFam DNA ligase 220 443 - -
Mepo6g01680 1168 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 443 - -
Mepo6g01680 1168 SUPERFAMILY BRCT domain 789 910 IPR036420 -
Mepo6g01680 1168 MobiDBLite consensus disorder prediction 1127 1154 - -
Mepo6g01680 1168 ProSitePatterns ATP-dependent DNA ligase signature 2. 417 441 IPR016059 GO:0003909
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01680 214 599 Core DNA Replication Machinery Family AT1G08130 27.970 2.82e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01680 K10777 - gmx:100816002 1806.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01680 6 18796959 18814107 Mepo6g01680 6 18796959 18814107 ECH