Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01563 ATGGCTGAAATTCACACTCAACCTCCAACAATTAGTCCCACGATAAGCAAACCATGTAATCCTACACAACAACATGGTGTCAATTCAATGGTTCTTGTAGCAGCTATAGTATGTGCTTTACTTTGTGCTCTTGGCCTCAACACTATGTTACAATGTGTGTTCCAATGTGCCAACCGTGTCCTTACTGAACCTCTACAATGGATTGCTTCTCGAAGGCGCAATTCCGGACTCAAGAAGAAAGAAATGGTTGCTTTGCCAACATCAATTTATAATACTCATTCTCCTCCATCTTTGGATTCTAATTGTGCCATTTGCTTAGCTGAGTTTTGTGATGGAGATAACATGAAGTTGCTACCAAAGTGTAATCATCGTTTTCATGTTGTTTGCATTGATGAATGGTTGCTTGCTCATTCTTTTTGTCCTACTTGTAGGAAAATGATCAAGTCCAATGATTCAGTACACTGCTTAAGCATTGTCATATCATAG 486 0.3909 MAEIHTQPPTISPTISKPCNPTQQHGVNSMVLVAAIVCALLCALGLNTMLQCVFQCANRVLTEPLQWIASRRRNSGLKKKEMVALPTSIYNTHSPPSLDSNCAICLAEFCDGDNMKLLPKCNHRFHVVCIDEWLLAHSFCPTCRKMIKSNDSVHCLSIVIS 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01563 161 Pfam Ring finger domain 101 144 IPR001841 -
Mepo6g01563 161 PANTHER RING-H2 FINGER PROTEIN ATL78 8 149 IPR044602 GO:0016567|GO:0016740
Mepo6g01563 161 SUPERFAMILY RING/U-box 101 150 - -
Mepo6g01563 161 SMART ring_2 102 143 IPR001841 -
Mepo6g01563 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 153 IPR013083 -
Mepo6g01563 161 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01563 Mepo-Chr6 17178139 17178855 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01563 1 145 C3H Transcription Factor Family AT3G10910 35.625 1.58e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01563 - K19040 psat:127138077 282.722