Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01511 ATGGCGTCCTCCAGTAAACGCCCTGCTTCAACCGGAATTTCGCCTGAAGAAGGACGCAAAAAACTTAAACTGTCAAGTGATAGCTTGCCATGTTTAACACATGGTGATGTTGTAGATTACAGCAGTCCGTATGCAATTTCAAATGTTATAAATCGCTTAGAGAGTGGAAAATTTGGAAGTGTGACAAAAAATATTGAAGACCTTATAACCCAGAAAATGCAAATATTGGGCCCTTACTTTGCAAAATGTCCTAGACTTGTTAGTCAACTATTGAGAGTGGTGACGGATCATGATGAAGAAACTCCCAACATGGAAAATAAGAATGTTACTGGTTTGCAACATCGTAATGTCATAGATTTGGATTCAGACAGGGAGGACACCGAAAAGGATGTTTTGGCACCAAAAAGAGGATATAATGTTACGGCAGTACCATTTATCATTGATTCAGATGAGGAGGATGATAAGGATTATGGTCATGATACTGTTCCAACAGATCATGATGAAGAAACTCCCTACATTGAAAGTGAAAAAGCTACTGGTATGTCTTCTCAAAATGTTACCATTGATTCAAGTGAGGAAGGTGACAGGGATCAAAAAGAGGATGTTTTGGCTCCAAGAAGAGAAAAAGATGTTCCTCCAGCACCATCGCATGAAGTCATTATCATTGATTCGGATGAGGAAGATGATAAGGATCATGATGAAGAAATTCCCAACCTGGAAAATGAAAAAGTTAATGGGATGTCCTATCAAAATGTTATCATTGATTCAAATGGGGAAGATGACAGAGATCAAACGTCTTTTCTTCCATTTCATGAAGTTGTATTGCCAAAACCAGTTCAGTCTCCTGCATTAGAAATGATTGGATATCATGATCCCAATGCTTACCATGGAGGAGAACATGCAGATCTAAAATTTGAAACAAGTCTGCTTCCTAAAGATAACACAAAGAAAGACAAAGGTAATTATGTTGGAGTACATGAGGAAGAAGATAATAAGGAATTTGAAACAAGTCTGTTTCCTGAAGATAACACAAAGAAAGACAAAGGTGTTTATGTTGGTGTGCGTGAGGAAGAAGATAACAAGGTTGATACTGAAGATGACGGGCTAGAAGATGTTTGGAGGGAGATGGCAATGGCAATGGAAACTTCTAAAGATGTTTCTGCAGATCATCCACCCAAAGAAGAGGAAAATGACGCTGACTGTGATCATTCTTTCATTTTAAAAGACGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATTGACAGGGGAATTGAAACCATATTTGAGTTCCAATACAAGGTTAAAAAGAGCACAAGAACTTATATGTCTGAATCATGGAATGCCAAAGAAAAAGCTGATATATTTGGAGTTAAGATTGCTAAAGATGATCTCTCAGTAACTGAAATATCAGCACATCCTCAACATGCAAATCAAATGAAACCGCACCAAGTCGAAGGATTCAATTTTCTTGTCAGAAACCTGGTGGGAGACCATCCAGGGGGATGCATTCTGGCTCATGCTCCAGGATCTGGAAAGACATTCATGGTTATCAGTTTCATACAGAGTTTTCTAGAGAAGTATCCCGATGCACGACCTCTCGTGGTGCTTCCTAAGGGAATACTATCGACTTGGAAAAAGGAGTTTCTGACATGGCAAGTGGAAGATGTACCGCTTTATGATTTTTACAGTGTGAAGGCTGACAGTAGATCACAGCAATTGGAAGTCTTAAAACAGTGGGTGGATAACAAGAGTATCCTTTTCTTAGGATACCAACAGTTTTCGTCCATTATCTGTGATAACTGTAATAACAATACATCAATATCTTGCCAAGATATATTGCTCAAGAAACCGTCAATTCTCATTTTAGATGAGGGACACACTCCTAGGAATGAGAATACTGATACGGTACAGTCCCTCGCAAAAGTACAAACACCAAGAAAAGTTGTTTTGTCCGGAACTTTATATCAAAATCATGTCAAGGAGGTATTTAACGTGCTTAACCTTGTCCGCCCAAAGTTTATAAAGATGGAAACGTCTAAACCTATTGTCCAACGCATTAGGAGTAGGATCCATTTACCTGGTGTGAAAGACTTCTGTGATTTGGTTGAAAACACTTTGCAGAAGGACCCGGATTTTAAAAGGAAAGTAGCTGTTATACATGATTTGCGGGAGATGACCAGCAAGGTACTGCACTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTAGTTGATTTTACTGTGGTGCTCAATATGACACCCAGACAGAAGCATGAAGTTAAGACAATAAAGAGGGTATTTAGAAAGTTCAAGGTGTCTTCTGTAGGTAGTGCTGTATACCTGCACCCAGACTTGAAACCAATTGCAGAGAAATGTAGTGAAAATTCTATACCTGAGCATACAATGGGTGATCTAATAGCAAACCAAGATGTGAGAGATGGGGTGAAATTAAAATTCTTTCGCAATATGCTGAATCTATGCCAATCAGCTGGGGAGAAGCTTTTGGTGTTCAGTCAATATCTCTTGCCTCTAAAATATTTGGAAAGGTTAGCTATGAAATGGAAGGGCTGGAGTCTTGGCAAAGAAATTTTTGTAATTTCAGGAGAATCGTCCACTGAACAAAGGGAATGCTCCATGGAAAAATTCAACAATTCACCCGAGGCCAAAATCTTTTTTGGGTCAATCAAAGCATGTGGTGAGGGTATATCATTGGTCGGGGCATCCCGTGTCATCATCTTAGATGTGCACCTCAACCCGTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGACCAGGCCAGAAAAGGAAAGTGTTTGTATATCGATTGATAGCTGCTGATTCTCCAGAAGAGGAAGATCACAGTACTTGTGTCAAGAAGGAATTAATTTCGAAAATGTGGTTCGAATGGAATGAATATTGTGGTGAAAAAGCTTTTGAAGTTGAGACAGTTGATGTGAAGGAATGTGGTGATATGTTTCTAGAAAGTCCATTGTTAGGGGAAGATGTAAAAGCCCTGTATAAAAGGTAA 3036 0.3933 MASSSKRPASTGISPEEGRKKLKLSSDSLPCLTHGDVVDYSSPYAISNVINRLESGKFGSVTKNIEDLITQKMQILGPYFAKCPRLVSQLLRVVTDHDEETPNMENKNVTGLQHRNVIDLDSDREDTEKDVLAPKRGYNVTAVPFIIDSDEEDDKDYGHDTVPTDHDEETPYIESEKATGMSSQNVTIDSSEEGDRDQKEDVLAPRREKDVPPAPSHEVIIIDSDEEDDKDHDEEIPNLENEKVNGMSYQNVIIDSNGEDDRDQTSFLPFHEVVLPKPVQSPALEMIGYHDPNAYHGGEHADLKFETSLLPKDNTKKDKGNYVGVHEEEDNKEFETSLFPEDNTKKDKGVYVGVREEEDNKVDTEDDGLEDVWREMAMAMETSKDVSADHPPKEEENDADCDHSFILKDDLGYVCRVCGVIDRGIETIFEFQYKVKKSTRTYMSESWNAKEKADIFGVKIAKDDLSVTEISAHPQHANQMKPHQVEGFNFLVRNLVGDHPGGCILAHAPGSGKTFMVISFIQSFLEKYPDARPLVVLPKGILSTWKKEFLTWQVEDVPLYDFYSVKADSRSQQLEVLKQWVDNKSILFLGYQQFSSIICDNCNNNTSISCQDILLKKPSILILDEGHTPRNENTDTVQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFIKMETSKPIVQRIRSRIHLPGVKDFCDLVENTLQKDPDFKRKVAVIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNMTPRQKHEVKTIKRVFRKFKVSSVGSAVYLHPDLKPIAEKCSENSIPEHTMGDLIANQDVRDGVKLKFFRNMLNLCQSAGEKLLVFSQYLLPLKYLERLAMKWKGWSLGKEIFVISGESSTEQRECSMEKFNNSPEAKIFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKRKVFVYRLIAADSPEEEDHSTCVKKELISKMWFEWNEYCGEKAFEVETVDVKECGDMFLESPLLGEDVKALYKR 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01511 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 465 698 IPR027417 -
Mepo6g01511 1011 MobiDBLite consensus disorder prediction 148 215 - -
Mepo6g01511 1011 Gene3D - 743 999 IPR027417 -
Mepo6g01511 1011 SMART ultradead3 476 686 IPR014001 -
Mepo6g01511 1011 Pfam SNF2-related domain 500 764 IPR000330 GO:0005524|GO:0140658
Mepo6g01511 1011 MobiDBLite consensus disorder prediction 1 20 - -
Mepo6g01511 1011 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 974 IPR027417 -
Mepo6g01511 1011 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 137 1010 IPR044567 GO:0080188
Mepo6g01511 1011 CDD SF2_C_SNF 818 946 - -
Mepo6g01511 1011 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 494 673 IPR014001 -
Mepo6g01511 1011 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 821 989 IPR001650 -
Mepo6g01511 1011 SMART helicmild6 850 935 IPR001650 -
Mepo6g01511 1011 MobiDBLite consensus disorder prediction 156 174 - -
Mepo6g01511 1011 MobiDBLite consensus disorder prediction 190 214 - -
Mepo6g01511 1011 Gene3D - 447 693 IPR038718 -
Mepo6g01511 1011 Pfam Helicase conserved C-terminal domain 823 934 IPR001650 -
Mepo6g01511 1011 Coils Coil 1011 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01511 Mepo-Chr6 16556323 16562926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01511 832 963 RAD5 or RAD16-like Gene Family AT5G43530 37.121 3.92e-16 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo6g01511 SNF2_N 3e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01511 K10875 - gmx:100795356 1228.39