Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01502 ATGGTTGATAACTTTGGAGGTAGTTCCTCTAACGACAATGGCGGTATCAAGGAACAAGACAGGTTGCTTCCAATAGCCAATGTTGGTCGGATAATGAAGCAGATTTTACCTCAGAATGCGAAAGTATCGAAGGAAGCAAAAGAAACAATGCAAGAATGTGTGAGTGAGTTCATAAGCTTCGTAACGAGTGAAGCCTCGGAGAAATGCAGGAAGGAAAGGAGAAAGACTGTAAATGGTGATGATATTTGTTGGGCTTTAGCAACACTTGGTTTTGATGATTATGCTGAGCCAATGAGAAGGTACTTGCATAGGTATAGAGAGTTAGAAGTTGATAAAATTAATACTAATAATCAAGAAATTAGAGGGGGAAATAGTCCTCAAGAGATAAATGAAATTTATAGAGGTGTTAGGCTGTGA 417 0.3861 MVDNFGGSSSNDNGGIKEQDRLLPIANVGRIMKQILPQNAKVSKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEPMRRYLHRYRELEVDKINTNNQEIRGGNSPQEINEIYRGVRL 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01502 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 22 86 IPR003958 -
Mepo6g01502 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 10 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo6g01502 138 SUPERFAMILY Histone-fold 19 116 IPR009072 GO:0046982
Mepo6g01502 138 ProSitePatterns NF-YB/HAP3 subunit signature. 53 69 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mepo6g01502 138 PRINTS CCAAT-binding transcription factor subunit A signature 50 68 - -
Mepo6g01502 138 PRINTS CCAAT-binding transcription factor subunit A signature 88 106 - -
Mepo6g01502 138 PRINTS CCAAT-binding transcription factor subunit A signature 69 87 - -
Mepo6g01502 138 FunFam Nuclear transcription factor Y subunit B-3 11 133 - -
Mepo6g01502 138 Gene3D Histone, subunit A 10 132 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01502 Mepo-Chr6 16461187 16461792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01502 4 116 CCAAT-HAP3 Transcription Factor Family AT2G47810 67.176 1.62e-58 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo6g01502 CBFD_NFYB_HMF 9.8e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01502 K08065 - gmx:100794513 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01502 6 16461187 16461792 Mepo6g01502 6 16461187 16461792 ECH
Mepo1g00777 1 7382946 7383562 Mepo6g01502 6 16461187 16461792 PCT