Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01459 ATGGAAGTAAAATACGATGAATCCATACCCAAACTCACCAGAGATCAAAACCCTCCCAACGATGACACAAAAGGTTACAATCTCAACGGTAAAATCATGCTCTGCGCTATAGTGCTTCTCTTCTTCATCATCGTTTTAATGCTGTGTCTCCATATTTATGCTCGTTGGTACCTTCTCCAATCTCGTCGCCGGAGAAACCGTATCCGCCGTCGTACTCAGCTCGTTTTCTTCACTGATGACCCAACAAACGCCGCTGTCACCACCGTTACACGCGGACTTGATGCCACCGTCATCGCTTCTCTTCCGTTGTTCTTTTACGATGCGAAGAATCACCCGGAAAACGCACCGGAATGTGCTGTTTGTTTGTCGGAATTTGAAACCGGTGAAACGGGTCGGGTTTTACCCAAATGTAAGCATAGTTTTCATACTGAGTGTATTGATATGTGGTTTCATTCTCATGACACGTGTCCTCTTTGTCGGGCGCCCGTTGAGCCCATGCAAAACCGACCCGATGTTGTTATAAATGTTTGCGAACCGGAAACCGGTTCAAGTTCCGGTTCGACCGAAGATGTGAATAATGAGAACCGAGCCGGTAAAGAGGTTGGTTCGAGTTCGGTTGGGTTAAGGAGGAAGCCGTCTTTTGCGGGAGTAACAGTTGAGGTGCCTACAAGAAACGAAGGTTTCCGAGACGAGTCAACTCAGTCATCGTCGTTCCGGTCGCCGATGACTAGAATGTCGTCGTTTAAGAGGATTCTTAGTATGAATTGGAAAGGGAACGTTTCTCCGTCGTGCGAGGGTGGTGGTGGGTGTAGCTCGGTAGCCGAAGCTTCGAATTACAGTCAAGATAGTCAAAATAAAGGTGTTTAG 867 0.474 MEVKYDESIPKLTRDQNPPNDDTKGYNLNGKIMLCAIVLLFFIIVLMLCLHIYARWYLLQSRRRRNRIRRRTQLVFFTDDPTNAAVTTVTRGLDATVIASLPLFFYDAKNHPENAPECAVCLSEFETGETGRVLPKCKHSFHTECIDMWFHSHDTCPLCRAPVEPMQNRPDVVINVCEPETGSSSGSTEDVNNENRAGKEVGSSSVGLRRKPSFAGVTVEVPTRNEGFRDESTQSSSFRSPMTRMSSFKRILSMNWKGNVSPSCEGGGGCSSVAEASNYSQDSQNKGV 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01459 288 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 19 168 - -
Mepo6g01459 288 MobiDBLite consensus disorder prediction 1 22 - -
Mepo6g01459 288 CDD RING-H2_EL5-like 117 160 - -
Mepo6g01459 288 MobiDBLite consensus disorder prediction 178 200 - -
Mepo6g01459 288 Pfam Ring finger domain 117 160 IPR001841 -
Mepo6g01459 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 169 IPR013083 -
Mepo6g01459 288 MobiDBLite consensus disorder prediction 261 288 - -
Mepo6g01459 288 SMART ring_2 118 159 IPR001841 -
Mepo6g01459 288 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Mepo6g01459 288 MobiDBLite consensus disorder prediction 273 288 - -
Mepo6g01459 288 FunFam RING-H2 finger protein ATL3 84 165 - -
Mepo6g01459 288 SUPERFAMILY RING/U-box 98 168 - -
Mepo6g01459 288 MobiDBLite consensus disorder prediction 177 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01459 Mepo-Chr6 15896316 15897939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01459 15 262 Rapid Response to Elicitors AT3G16720 47.312 5.87e-64 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01459 - - lja:Lj6g3v1468220.1 297.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01459 6 15896316 15897939 Mepo6g01459 6 15896316 15897939 ECH
Mepo1g00740 1 7051690 7053026 Mepo6g01459 6 15896316 15897939 PCT