Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01407 ATGAGTAGTAGTTCATCTAAAAACCCTATGCACAATAGTGAGGAGAAACCTTCCTCTTCTCCCTCATCACCAGTAAAGCTCTTTGGTTTCTCATTAACACCATCTAACACTCTTCCTTCTAACAACAAGAGATTCACATGCCACTTTTGTGGTCGTGAATTTACCAATTGTCAAGCGTTAGGAGGCCATCAAAACGCGCACAAGAGAGAACGCCAAAGAGCACACTTTCTTTCTATTCTTCCACATCATCAACACTTTGTACCATCTTCACCATATCATCCTATGATAGCACAACATGGTGCACCAAGAGTAGTGTTACTTTGCCCACCTGGGTCAGCATGGGAGACACAGCCTTATGAAGAGGGGCTTAATGAGGTTCATTTTGATGCAGCTACATCCAGAAATAATGGGACTTCCATGCAAGTACACAATAATATTATTGATGGTGATGTTGATCTTAATTTGAGCCTAGCTTGTGCACCTTTAAATTCTAAGGACAAATAG 504 0.4107 MSSSSSKNPMHNSEEKPSSSPSSPVKLFGFSLTPSNTLPSNNKRFTCHFCGREFTNCQALGGHQNAHKRERQRAHFLSILPHHQHFVPSSPYHPMIAQHGAPRVVLLCPPGSAWETQPYEEGLNEVHFDAATSRNNGTSMQVHNNIIDGDVDLNLSLACAPLNSKDK 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01407 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 72 IPR013087 -
Mepo6g01407 167 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Mepo6g01407 167 PANTHER ZINC FINGER PROTEIN 5 11 158 IPR044299 GO:0010090
Mepo6g01407 167 MobiDBLite consensus disorder prediction 1 25 - -
Mepo6g01407 167 Gene3D Classic Zinc Finger 26 85 - -
Mepo6g01407 167 SUPERFAMILY beta-beta-alpha zinc fingers 41 72 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01407 Mepo-Chr6 15273044 15273659 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01407 19 88 C2H2 Transcription Factor Family AT1G67030 39.773 5.11e-13 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo6g01407 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01407 - - tpra:123887517 237.654