Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01404 ATGGGAAGAGCTCCTTGTTGTGAAAAAGTTGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAAATCTTGACTGATTACATCAAAGAAAATGGTGAAGGATCTTGGAGGTTTTTGCCTAAGAAAGCAGGTTTGTTAAGGTGTGGGAAGAGTTGTAGACTAAGATGGATCAACTATTTGAGAGCTGATGTGAAGAGAGGAAACATATCCCCTCATGAGGAAGAAATCATTGTCAAGTTGCATGATGTTCTTGGAAATAGGTGGTCAGTGATAGCATCACATTTACCGGGACGAACAGATAATGAGATAAAGAACTATTGGAACTCTCATTTGAGAAGGAAAATTTACTGCTTCATGAGATCCATAAACGAGTCTCCACCACCCCTTGATATGGCTTCTACATCCAAAACAATTAATCAAGGGAAAATAAATACTCCAAGCATAGAAGAAGACAATAGCATGGCGTTGATTAAAAATTCCCTTGAACCAATGCCTAAAGAAAAAACAACTTCCCAATACTATAATGTACAAGGAGTTGAAGATATTTCATCTGAGAATAATATTTATGAAATGAAGGGTAACATAAATAATACAGTTGCATCATACCCTAGCAAAAATGAATTGAATATTGATGCGGGTTTGGGACCATATAAATGGCTAGATGATGAAATTATGAAACTTCGTAACATGTTTCTAAATGGGATAGGAAATTATAATTATGTAACAATGCATGAGAATGATGAGAAGGGTAATTATGAATGTGACTCTAGAAAGATGCATGTGGAGATAATGGAAACAAATAAGGAAATGAAAAGTGATATTTGTGGTTCATCATATAATGGAGAGAGTGGAGAAGGGTACATTTCTAATGCATCAGTGAATTCTGCCATAGATTATGATCAATTGTCTGATTGGGACTTTTGTCATGAAGACCAAATGAATACTTGCTTGTGGGGTCCAGGCATTGGTGAAATCATGAATGGTTTTTATCAGTAA 999 0.3584 MGRAPCCEKVGLKKGRWTAEEDKILTDYIKENGEGSWRFLPKKAGLLRCGKSCRLRWINYLRADVKRGNISPHEEEIIVKLHDVLGNRWSVIASHLPGRTDNEIKNYWNSHLRRKIYCFMRSINESPPPLDMASTSKTINQGKINTPSIEEDNSMALIKNSLEPMPKEKTTSQYYNVQGVEDISSENNIYEMKGNINNTVASYPSKNELNIDAGLGPYKWLDDEIMKLRNMFLNGIGNYNYVTMHENDEKGNYECDSRKMHVEIMETNKEMKSDICGSSYNGESGEGYISNASVNSAIDYDQLSDWDFCHEDQMNTCLWGPGIGEIMNGFYQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01404 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mepo6g01404 332 CDD SANT 16 61 IPR001005 -
Mepo6g01404 332 Gene3D - 13 66 - -
Mepo6g01404 332 Gene3D - 71 116 - -
Mepo6g01404 332 FunFam Myb transcription factor 11 67 - -
Mepo6g01404 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mepo6g01404 332 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Mepo6g01404 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mepo6g01404 332 CDD SANT 71 112 IPR001005 -
Mepo6g01404 332 SMART sant 13 63 IPR001005 -
Mepo6g01404 332 SMART sant 66 114 IPR001005 -
Mepo6g01404 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mepo6g01404 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mepo6g01404 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mepo6g01404 332 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01404 Mepo-Chr6 15238102 15241089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01404 1 228 MYB Transcription Factor Family AT5G49330 52.381 2.22e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mepo6g01404 Myb_DNA-binding 9.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01404 K09422 - gmx:100819041 374.015