Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01396 ATGATGGCACAAAACAACTTCACAGGACAGCTTGTTGGTTCAGAAATACATGGATTCCACACCTTGAGAGACCTGGATGTTGGCGAAACCTTGGAGGAAGCAAAAAGCAGATGGCTTCGTCCGAATGAGATTCACGCCATACTCAGCAATCACAAATATTTTACTATCCATGTCAAGCCCTTGAATTTGCCCAAAAGTGGTACTGTTGTACTATTTGACCGCAAGATGCTTAGGAACTTCCGAAAAGATGGGCACAACTGGAAAAAGAAAAATGACGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAGAGAATCCACGTATATTATGCACACGGCCAAGATAACCCAGGCTTTGTTCGAAGATGTTATTGGTTGCTTGATAAGAGTCTGGAGCACATAGTCCTGGTTCATTATCGTGAAACACAAGAGTCTCAAAGTGCTCCTGTTACACCGTTAAATTCAAATTCGAGTCCTATTTCTGATACAACTGCGCCATGGATTCTATCAGAAGAATTAGATTCTGGAACCAACAGTGCTTATACTAACGGTCTTAATGGAAATTTAACAGTCAGAAGTCATGAACAGGAGCTTCATGAGCTTAATACACTTGATTGGGATGAACTAGTGGCTTCTAATGTTAATACCCCTACTATACCAAATGGAGGAAACGAACTGCGTTACTATCAACTAAATCAAAGCTCACTGAATGGCAGCTTTGACAATGTTGCCGGTAATCCTTCCTCAGAAATTCCTTCGTATGGTATTCTAACTCCGCCAGAGTCTGGGAGCAGTAATGTTTCTTACTGTTTCCCAGAAAGTGCTAACGTTCAAAAGAATCATTCTATGACTTTTGGTGGTGTTGATTCCATTGACACTTTAGTCAATGAAGGTTTGCAAAGTCAGAATAGCTTTGGAACGTGGATGAACAATGCCATATCTTACACACCATGTTCTGTAGAGGCGTCAACTCTTGAATCGTCAATTCCTTCGTCTGTTCATGATCCATTTTCATCACTGGTGATGGATAATCAACAATCTTCTCTTCCGGAACAAGTATTTCATATTACTGAGGTGGCCCCTTCATGGGTTTCTTCCACTGAGAAAACAAAGGTCCTGGTAACTGGATATTTTCTCTTTGATTATCAACACCTTGCAAAGTCCAATATAATGTGTGTCTGTGGCGAAACAAGTGTTCCCGTAGAAATTGTTCAGGTTGGAGTTTACCGATGCTGGGTATTGCCGAATTCTCCTGGATTCGTGAATCTCTATTTGAGCTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGCACTCCTATTTTGCACGATCCTGCTGCTTCAATGGAGGAGACATACAACTGGGTTGAATTTCGTCTTCAAATGAGGCTTTCTCACTTGCTTTTTACAACACCAAAGACCCTTGATGTTTTCTCTAGTGAAGTATCACCTACTGCACGGAAAGAGACTAAAAAATTCGCCTCCAAAACATTATTTCTTTCCAAAAGTTTTCTACACTTCATGAAGTCGTCTGACGCAAACGCACCTCCCTTTCCGCAAGCGAAAAATACCTTGTTCGAAATTGCGTTGAAAAACAAACTCAGGGAATGGCTTTTGGAACATATTGTTTTAGGATGTAAGACTACTGAGTATGATGCACAAGGCCAAAGTGTAATTCATTTGTGTGCAATGTTGGGATATACTTGGGCTATTACTTTGTTTTCGTGGTCAGGCTTGTCGCTGGATTTCCGCGACAAACTTGGATGGACAGCTCTTCATTGGGCAGCATATAATGGAATGGAGAAAATGGTTGCTACGCTGTTGTCTTGTGGAGCAAAGCCCAATTTGGTGACAGATCCAACTACCGAATACCCTGGTGGCTGTACTGCTGCTGATCTTGCTTATATGAAAGGATATGACGGTTTAGCTGCTTATCTTTCAGAAAAGTGTTTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATCAGTGGTTCACTCCAAACCACTACAACTGATCCAGTAAATGCTGAGAACCTTACAGAGGACCAAGTGTACTTAAAGGATACATTGGCAGCTTACCGGACAACAGCCGAGGCAGCAGCACGCATACAAGCAGCGTTTAGGGAGCACTCACTAAAATTGCGATATCAGTCGGTTCAATTTATCAGTCCAGAGGAGGAAGCACGCCAGATAGTAGCAGCAATGAAAATTCAACATGCCTTTCGCAACTTTGAGACAAGAAAAGCAATGGCAGCCGCTGCTCGGATCCAGTACAGATTCCGTTCATGGAAGTTGCGTAGAGAGTTTCTCCACATGCGACGCCAGGCTATTAGAATTCAAGCTGCATTTAGAGGCTTTCAAGTGCGTAGGCAATATCGTAAGATTCTATGGTCTGTTGGAATTCTTGAGAAAGTAATCCTGCGTTGGCTTTTAAAGAGAAAAGGTTTCCGTGGGCTTGAGGTGAATCCGGACGAAGACATGAAAGATGAGAAGCAGGAAAGCGATGTAGAGGAGGACTTCTTTAAGACTGGCAGGAAACAGGCGGAAGAACGCGTTGAGAGATCTGTGGTACGCGTACAAGCCATGTTCCGTTCTAAGAAAGCACAACAAGAGTATAGCAGAATGAAAATGGCACATAGTCAAGCACAGTTGGAACTTGAATTAGAACTCATCAATTCTGATGTGGACATGTTAACAACAAAGACATCATAA 2745 0.4204 MMAQNNFTGQLVGSEIHGFHTLRDLDVGETLEEAKSRWLRPNEIHAILSNHKYFTIHVKPLNLPKSGTVVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPGFVRRCYWLLDKSLEHIVLVHYRETQESQSAPVTPLNSNSSPISDTTAPWILSEELDSGTNSAYTNGLNGNLTVRSHEQELHELNTLDWDELVASNVNTPTIPNGGNELRYYQLNQSSLNGSFDNVAGNPSSEIPSYGILTPPESGSSNVSYCFPESANVQKNHSMTFGGVDSIDTLVNEGLQSQNSFGTWMNNAISYTPCSVEASTLESSIPSSVHDPFSSLVMDNQQSSLPEQVFHITEVAPSWVSSTEKTKVLVTGYFLFDYQHLAKSNIMCVCGETSVPVEIVQVGVYRCWVLPNSPGFVNLYLSFDGHKPISQVVNFEYRTPILHDPAASMEETYNWVEFRLQMRLSHLLFTTPKTLDVFSSEVSPTARKETKKFASKTLFLSKSFLHFMKSSDANAPPFPQAKNTLFEIALKNKLREWLLEHIVLGCKTTEYDAQGQSVIHLCAMLGYTWAITLFSWSGLSLDFRDKLGWTALHWAAYNGMEKMVATLLSCGAKPNLVTDPTTEYPGGCTAADLAYMKGYDGLAAYLSEKCLVEQFNDMSLAGNISGSLQTTTTDPVNAENLTEDQVYLKDTLAAYRTTAEAAARIQAAFREHSLKLRYQSVQFISPEEEARQIVAAMKIQHAFRNFETRKAMAAAARIQYRFRSWKLRREFLHMRRQAIRIQAAFRGFQVRRQYRKILWSVGILEKVILRWLLKRKGFRGLEVNPDEDMKDEKQESDVEEDFFKTGRKQAEERVERSVVRVQAMFRSKKAQQEYSRMKMAHSQAQLELELELINSDVDMLTTKTS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01396 914 Pfam Ankyrin repeats (3 copies) 538 625 IPR002110 GO:0005515
Mepo6g01396 914 Gene3D - 507 659 IPR036770 -
Mepo6g01396 914 FunFam calmodulin-binding transcription activator 5 526 666 - -
Mepo6g01396 914 ProSiteProfiles CG-1 DNA-binding domain profile. 27 153 IPR005559 GO:0003677
Mepo6g01396 914 SUPERFAMILY E set domains 361 447 IPR014756 -
Mepo6g01396 914 SUPERFAMILY Ankyrin repeat 531 659 IPR036770 -
Mepo6g01396 914 Gene3D - 760 807 - -
Mepo6g01396 914 ProSiteProfiles Ankyrin repeat profile. 596 628 IPR002110 GO:0005515
Mepo6g01396 914 SMART ANK_2a 596 625 IPR002110 GO:0005515
Mepo6g01396 914 SMART ANK_2a 635 666 IPR002110 GO:0005515
Mepo6g01396 914 ProSiteProfiles IQ motif profile. 864 892 IPR000048 GO:0005515
Mepo6g01396 914 ProSiteProfiles IQ motif profile. 707 736 IPR000048 GO:0005515
Mepo6g01396 914 ProSiteProfiles IQ motif profile. 760 786 IPR000048 GO:0005515
Mepo6g01396 914 ProSiteProfiles IQ motif profile. 783 807 IPR000048 GO:0005515
Mepo6g01396 914 Pfam IQ calmodulin-binding motif 762 780 IPR000048 GO:0005515
Mepo6g01396 914 Pfam IQ calmodulin-binding motif 785 804 IPR000048 GO:0005515
Mepo6g01396 914 Gene3D Immunoglobulins 354 450 IPR013783 -
Mepo6g01396 914 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 26 893 - -
Mepo6g01396 914 ProSiteProfiles Ankyrin repeat region circular profile. 596 624 - -
Mepo6g01396 914 SMART iq_5 740 762 IPR000048 GO:0005515
Mepo6g01396 914 SMART iq_5 782 804 IPR000048 GO:0005515
Mepo6g01396 914 SMART iq_5 862 884 IPR000048 GO:0005515
Mepo6g01396 914 SMART iq_5 706 728 IPR000048 GO:0005515
Mepo6g01396 914 SMART CG_1_2 30 148 IPR005559 GO:0003677
Mepo6g01396 914 Pfam CG-1 domain 33 146 IPR005559 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01396 Mepo-Chr6 15132971 15139785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01396 31 896 CAMTA Transcription Factor Family AT3G16940 56.422 0.0 943
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Mepo6g01396 CG-1 1.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01396 K21596 - gmx:100819198 1372.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01396 6 15132971 15139785 Mepo6g01396 6 15132971 15139785 ECH
Mepo1g00694 1 6662271 6670043 Mepo6g01396 6 15132971 15139785 PCT