Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01363 ATGGCTTCAACTAGTAGAGGTGAAAAAACAGAACCAAATACATCCTCCTCACGCCACCAACTTCAAATCACAACAACTGAACAACAACAAAACAAATCAATGAAAAAAGCAATTGCACAATACACTGAAGACGCACGTCTCCACGCCGTTTTCGAACAATCAGGCGACTCTTTCGATTACTCTCAATCCATCCGCCTTACTACAGCAACCGTACCTGAACAACAGATCACTGCTTACTTAGCCAAAATCCAACGTGGCGGTTTTATTCAACCTTTTGGTTCAATGATCGCTGTTGATGAACCTTCTTTTCGCGTTCTCGCTTATAGCGAGAACGCACGTGATATGCTTGGTATTACTCCTCAATCGGTACCTTCACTTGAGGACGATGACTATGAGTCATCGTCCTCAGGTTTTAATATAGGTACCGATGTTAGGTCACTTTTTACTCATTCTAGTGGTGTTTTACTTGAGAAAGCCTTCGCTGCTCGAGAGATTAGTCTTATGAATCCTATTTGGATTCATTCTAGATCTACTGGGAAGCCTTTTTATGGTATTCTTCATAGGATTGATGTTGGTGTTGTTATTGATTTGGAACCTGCAAGATCTGAGGATCCTGCTCTTTCCATTGCTGGCGCGGTACAGTCTCAGAAACTGGCTGTACGCGCCATTTCTCAGCTTCAATCACTTCCTGGTGGTGATGTTAAGGTTCTTTGTGATGCTGTTGTTGAGAGTGTTAGGGAATTGACTGGTTATGATAGGGTTATGGTTTATAAGTTTCATGAGGATGAGCATGGTGAGGTTGTTGCTGAGAGTAAGAGGATTGATTTGGAGCCGTATATCGGTTTGCATTATCCTGCTACTGATATACCGCAGGCGTCGAGGTTTTTGTTTAAGCAGAATAGGGTTAGGATGATTGTGGATTGTAATGCTTCTCCTGTTAGGGTTTTTCAAGACGAGGCGCTTGTGCAGCCGGTTTGTTTGGTTGGGAGTACGCTTCGTGCTCCTCATGGTTGTCATGCTCAGTATATGGCGAATATGGGGTCGATTGCTTCGTTGGCTATGGCTGTTATTATTAATGGGAATGATGAAGATGGTGTTGGGATTGGTGGTACTGGAAGAAATTCCATGAGGCTTTGGGGTCTTGTTGTTTGTCATCATACTTCTGCTAGGTGTATTCCTTTTCCTCTTAGGTATGCTTGTGAGTTTCTAATGCAGGCTTTTGGGCTTCAGTTGAATATGGAGCTTCAGTTAGCCGCGCAGTCATTGGAGAAGCGGGTTTTGAGGACGCAGACTCTGTTGTGTGATATGTTGCTTAGGGATTCTCCTACTGGGATTGTTACTCAGAGTCCTAGTATTATGGACTTGGTTAAGTGTAATGGGGCTGCTTTGTTTTATCAGGGAAACTACTACCCGTTGGGTGTTACCCCAACAGAGTCTCAGATAAGGGATATTATAGAGTGGTTGTTGGCCTTTCATGGTGATTCAACGGGTTTGAGTACTGATAGTTTGGCTGATGCTGGTTATCCCGGGGCTGCTTCTCTTGGGGATGCGGTTTGTGGGATGGCTGTTGCGTATATCACTGAAAAGGATTTTCTTTTCTGGTTCAGATCACATACAGCAAAAGAGATTAAATGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCCTTCAAGGCCTTTTTAGAAGTGGTGAAGAGCCGTAGTATGCAGTGGGACAATGCAGAAATGGATGCAATTCACTCCTTGCAGCTTATCCTGCGAGACTCGTTTAAGGAAGCTGAGAATAATGATTCAAAGGCTGTTGTGCATACCCATATGGCAGAACTAGAGCTGCAAGGGGTGGATGAACTGAGTTCTGTGGCTAGAGAAATGGTTAGGTTGATAGAAACTGCCACTGCTCCCATATTTGCTGTTGATGTCAATGGCCGTATCAATGGGTGGAATGCAAAGGTTTCTGAATTGACGGGACTTCTGGTAGAGGACGCTATGGGGAAGTCTTTGCTTCATGATCTTGTGTATAAGGAGTCTCAAGAAACTGTAGACAAGCTTCTTTCTCATGCTTTGAAAGGTGAAGAAGATAAGAATGTTGAAATAAAAATGAGGACGTTTGGCCCGGGGAATCAAAATAAGGCAGTTTTTATAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTGTGCTTTGTTGGTCAGGATGTTACTGGTCAAAAAGTTGTCATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACATAGTCCAAATGCATTGATCCCTCCCATTTTTGCATCGGATGATAACACATGTTGCTTAGAGTGGAACAATGCTATGGAAAAGCTCAGCGGTTGGAGCCGTACAGATGTAATTGGCAAACTGTTGGTGGGAGAGGTTTTTGGTAGTTTCTGTCAGTTGAAGGGTTCAGATGCTATGACAAAATTCATGATTGTATTGCACAATGCACTTGGTGGACAAGACACAGACAAATTCCCATTTTCATTTGTTGACAGACATGGAAAGTTTGTGCAGACTTTCTTGACCGCAAATAAGAGGGTTAACATGGATGGTCAGATCATTGGTGCCTTTTGCTTTTTGCAAATTGTGAGTCCTGAACTTCAACAGGCTCTTACAGTCCAGAGACAACAGGATAGTAGTTGCTTTGCTAGGATGAAAGAGTTAGCTTATATTTGTCAAGAAGTAAAGAATCCCTTGAGTGGCATACGCTTTACAAACTCTCTTCTGGAGTCTACATGCCTGACTGATGAACAAAAGCAGCTCCTTGAGACTAGTGTTGCTTGTGAGAAGCAAATGTTAAAGATAATACGGGACATTGATCTTGACATCATCGATAACGGGTCCCTGGAGCTTGAAAAGCGGGAATTCTTGCTCGAGAATGTCATAAATGCAGTTGTTAGCCAAGTAATGTTATTGCTAAGAGAAAGAAATTTACAGTTGATTCGTGATATTCCTGAGGAAATCAAGGCATTGGCTGTTTATGGTGATCAATTGAGGATTCAACAAGTCTTGGCAGATTTCTTAATGAATGTGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAGATTCATGTATTTCCAAGAATAAAACAAATTTCAGATGGGCTCACTCTTCTGCATGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCGCCTGAATTGATTCAAGACATGTTCCATAACAATAAGTGGGTGACTCAAGAAGGTTTAGGGCTGAGCATGAGTAGGAAGATTATAAAGTTAATGAATGGCGAAGTCCAGTATGTCAGGGAGGCAGAACGGTGCTACTTCTTAGTTGTTCTTGAACTACCTGTGACGCGGAGAAGCTTAAAAAATGTTAATTAG 3420 0.426 MASTSRGEKTEPNTSSSRHQLQITTTEQQQNKSMKKAIAQYTEDARLHAVFEQSGDSFDYSQSIRLTTATVPEQQITAYLAKIQRGGFIQPFGSMIAVDEPSFRVLAYSENARDMLGITPQSVPSLEDDDYESSSSGFNIGTDVRSLFTHSSGVLLEKAFAAREISLMNPIWIHSRSTGKPFYGILHRIDVGVVIDLEPARSEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKVLCDAVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRIDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPVRVFQDEALVQPVCLVGSTLRAPHGCHAQYMANMGSIASLAMAVIINGNDEDGVGIGGTGRNSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLAAQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVKCNGAALFYQGNYYPLGVTPTESQIRDIIEWLLAFHGDSTGLSTDSLADAGYPGAASLGDAVCGMAVAYITEKDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSMQWDNAEMDAIHSLQLILRDSFKEAENNDSKAVVHTHMAELELQGVDELSSVAREMVRLIETATAPIFAVDVNGRINGWNAKVSELTGLLVEDAMGKSLLHDLVYKESQETVDKLLSHALKGEEDKNVEIKMRTFGPGNQNKAVFIVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNALIPPIFASDDNTCCLEWNNAMEKLSGWSRTDVIGKLLVGEVFGSFCQLKGSDAMTKFMIVLHNALGGQDTDKFPFSFVDRHGKFVQTFLTANKRVNMDGQIIGAFCFLQIVSPELQQALTVQRQQDSSCFARMKELAYICQEVKNPLSGIRFTNSLLESTCLTDEQKQLLETSVACEKQMLKIIRDIDLDIIDNGSLELEKREFLLENVINAVVSQVMLLLRERNLQLIRDIPEEIKALAVYGDQLRIQQVLADFLMNVVRYAPSPDGWVEIHVFPRIKQISDGLTLLHAEFRMVCPGEGLPPELIQDMFHNNKWVTQEGLGLSMSRKIIKLMNGEVQYVREAERCYFLVVLELPVTRRSLKNVN 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01363 1139 Gene3D - 888 967 - -
Mepo6g01363 1139 Gene3D PAS domain 628 752 - -
Mepo6g01363 1139 Gene3D - 420 593 IPR043150 -
Mepo6g01363 1139 CDD HATPase_Phy-like 1016 1128 IPR044767 -
Mepo6g01363 1139 FunFam Phytochrome 968 1134 - -
Mepo6g01363 1139 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 233 405 IPR016132 -
Mepo6g01363 1139 Pfam Phytochrome region 428 603 IPR013515 GO:0006355|GO:0009584
Mepo6g01363 1139 SMART HKATPase_4 1017 1132 IPR003594 -
Mepo6g01363 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 778 881 IPR035965 -
Mepo6g01363 1139 CDD PAS 775 883 IPR000014 -
Mepo6g01363 1139 FunFam Phytochrome 626 758 - -
Mepo6g01363 1139 FunFam Phytochrome 886 967 - -
Mepo6g01363 1139 SMART HisKA_10 905 969 IPR003661 GO:0000155|GO:0007165
Mepo6g01363 1139 ProSiteProfiles PAS repeat profile. 764 816 IPR000014 -
Mepo6g01363 1139 FunFam Phytochrome 420 550 - -
Mepo6g01363 1139 ProSiteProfiles Histidine kinase domain profile. 912 1132 IPR005467 -
Mepo6g01363 1139 ProSitePatterns Phytochrome chromophore attachment site signature. 333 342 IPR013516 -
Mepo6g01363 1139 Pfam GAF domain 233 415 IPR003018 GO:0005515
Mepo6g01363 1139 Pfam PAS fold 633 748 IPR013767 GO:0006355
Mepo6g01363 1139 Pfam PAS fold 764 883 IPR013767 GO:0006355
Mepo6g01363 1139 Pfam PAS fold 78 200 IPR013654 GO:0006355
Mepo6g01363 1139 MobiDBLite consensus disorder prediction 1 22 - -
Mepo6g01363 1139 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1017 1126 IPR003594 -
Mepo6g01363 1139 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 980 1129 IPR036890 -
Mepo6g01363 1139 SMART gaf_1 233 425 IPR003018 GO:0005515
Mepo6g01363 1139 Gene3D - 214 576 IPR029016 -
Mepo6g01363 1139 PRINTS Phytochrome signature 726 743 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 333 354 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 746 766 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 633 649 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 445 465 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 563 581 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 148 170 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 530 549 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 652 667 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 PRINTS Phytochrome signature 248 267 IPR001294 GO:0006355|GO:0009584
Mepo6g01363 1139 Gene3D - 968 1134 IPR036890 -
Mepo6g01363 1139 Gene3D PAS domain 82 336 - -
Mepo6g01363 1139 PANTHER OS08G0260000 PROTEIN 73 964 - -
Mepo6g01363 1139 SMART pas_2 82 149 IPR000014 -
Mepo6g01363 1139 SMART pas_2 632 699 IPR000014 -
Mepo6g01363 1139 SMART pas_2 763 833 IPR000014 -
Mepo6g01363 1139 SUPERFAMILY GAF domain-like 423 601 - -
Mepo6g01363 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 637 745 IPR035965 -
Mepo6g01363 1139 CDD HisKA 905 956 IPR003661 GO:0000155|GO:0007165
Mepo6g01363 1139 FunFam Phytochrome 777 885 - -
Mepo6g01363 1139 SUPERFAMILY PYP-like sensor domain (PAS domain) 83 204 IPR035965 -
Mepo6g01363 1139 NCBIfam PAS domain S-box protein 637 752 IPR000014 -
Mepo6g01363 1139 CDD PAS 641 748 IPR000014 -
Mepo6g01363 1139 PIRSF Phytochrome_conventional 14 1137 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Mepo6g01363 1139 Gene3D PAS domain 777 887 - -
Mepo6g01363 1139 Pfam His Kinase A (phospho-acceptor) domain 909 967 IPR003661 GO:0000155|GO:0007165
Mepo6g01363 1139 SUPERFAMILY GAF domain-like 213 412 - -
Mepo6g01363 1139 ProSiteProfiles PAS repeat profile. 630 701 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01363 Mepo-Chr6 14833871 14840600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01363 5 1130 Histidine Kinase Gene Family AT4G16250 73.596 0.0 1756
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01363 K12121 - gmx:100799831 1952.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g01363 6 14833871 14840600 Mepo6g01363 6 14833871 14840600 ECH