LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mepo6g01320	ATGGAAGTGGAAGGAAGTGTAATAAGCAACTCAAACATCACCATGGTCCAAAGTGATGATGAGTTGGATCTTCGAAGAGGACCATGGACCGTTGATGAAGATCTTGCTCTCATCAATTACATTGCAAATCATGGTGAAGGTCGATGGAATACCCTTGCTCGTTCAGCTGGACTCAAACGAACTGGCAAGAGCTGTAGATTGAGATGGTTGAATTATCTTCGTCCAGATGTTCGTCGTGGTAACATCACACTTGAAGAACAACTTCTTATTCTTGAACTTCATAGTCGTTGGGGAAACCGATGGTCCAAAATTGCTCAATACTTACCGGGAAGAACAGACAACGAGATCAAGAATTATTGGAGAACCCGTGTCCAAAAACATGCCAAACAACTCAAATGTGACGTAAATAGCAAGCAATTCAAAGATGCCATGCGCTACCTTTGGATGCCAAGGCTAGTGGAGCGCATCCAAGCTGCCGCATCCACCTCCGCCACCCTGGCCACCGCCACTAATAATGGTTCACCAAGTGGTACAACAGCGGTCACCGCCAACAATACGACATACAACATAAACAACAATTTTGATGTTCATAGTGGCGCGAACATGTTAACTCCAACAATTATGAACACCAACAGTTTATGTGGTTCACATGTTACACAAAGTTATACTCCAGAAAATAGTAGCAATGGCACCGCGGCTGCATCATCGGATTCATTTGGGACACAAGTTTCGCCTGTCTCGGAATTAACTCAAGATTATTACAATGTCCCAGTTGGTAGTAACAACAATAGTAACCCTAATTCTGATTATTACCAACAATTTGGGTTTTTTGATTGCATCACTAGCCCATCTGGATTGTTCCCTCAAATGGATTTCAACTCGATGGAACCAAACACACCTTGGATTCAAGGGGACACATCTGACAATTTCTGGAATGTTGAAAACATGTTGCTCTTTCAACATCTCAACGACAACATGTGA	981	0.4281	MEVEGSVISNSNITMVQSDDELDLRRGPWTVDEDLALINYIANHGEGRWNTLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDAMRYLWMPRLVERIQAAASTSATLATATNNGSPSGTTAVTANNTTYNINNNFDVHSGANMLTPTIMNTNSLCGSHVTQSYTPENSSNGTAAASSDSFGTQVSPVSELTQDYYNVPVGSNNNSNPNSDYYQQFGFFDCITSPSGLFPQMDFNSMEPNTPWIQGDTSDNFWNVENMLLFQHLNDNM	326

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mepo6g01320	326	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	23	73	IPR017930	-
	Mepo6g01320	326	FunFam	MYB transcription factor	83	146	-	-
	Mepo6g01320	326	CDD	SANT	28	73	IPR001005	-
	Mepo6g01320	326	SMART	sant	25	75	IPR001005	-
	Mepo6g01320	326	SMART	sant	78	126	IPR001005	-
	Mepo6g01320	326	MobiDBLite	consensus disorder prediction	219	242	-	-
	Mepo6g01320	326	CDD	SANT	99	122	IPR001005	-
	Mepo6g01320	326	Pfam	Myb-like DNA-binding domain	79	122	IPR001005	-
	Mepo6g01320	326	Pfam	Myb-like DNA-binding domain	26	73	IPR001005	-
	Mepo6g01320	326	Gene3D	-	23	79	-	-
	Mepo6g01320	326	FunFam	Myb transcription factor	26	78	-	-
	Mepo6g01320	326	Gene3D	-	83	146	-	-
	Mepo6g01320	326	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	22	214	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Mepo6g01320	326	ProSiteProfiles	Myb-like domain profile.	21	73	IPR001005	-
	Mepo6g01320	326	ProSiteProfiles	Myb-like domain profile.	74	124	IPR001005	-
	Mepo6g01320	326	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	74	128	IPR017930	-
	Mepo6g01320	326	SUPERFAMILY	Homeodomain-like	23	120	IPR009057	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mepo6g01320	Mepo-Chr6	14384272	14386516	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mepo6g01320	1	271	MYB Transcription Factor Family	AT3G06490	57.664	9.88e-87	262

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Mepo6g01320		Myb_DNA-binding	5.7e-15	CL0123