Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo6g01295 ATGACAACAACAGAGGCAGCTGGTCCTAGATATGCACCTGACGATCCTACGTTACCGACGCCGTGGAAAGGTTTGATTGATGGAAGTACTGGTTTGTTGTATTATTGGAATCCCGAAACTAATGTTACTCAATATGAAAAGCCGGGGCCGGTGAATCCGCCCGCTCCTGCGGCTTCTACGCCGAGCTTGGCACCTATTCCGGTGGCTCATTCCGTGCAACAACAGCATGGGCAAGGGCAGCAGATGATGCAAGTGCAGCAGCCTTCCCAACAACAGCAGGGGGGTCATTATGGTCAAGGGATGCCGCAGCAGCAGAGTCCTCATGTGGCGCAGGCGGCCACTCAGCAGCAGTCTTCTCAGGCTGCTCAGCCTGTGCAGCCGCAACCGGTGCAACAACCTGGGTTACACCAAGGTAGACTGCAGATGATGCAGCCTCAGGGGCAGCAGATGATGCAGTATCAAGGACAGCAGCAATATCAGCAAATGCATCATCAGATGCCTCCGCAGGCGATTCCTCGTCCACAACAATTTGGACAAGGAAATTCTCAGGATCACGGTTCGCAGCTTGTGCAACCGCAAGCGCCGCAATTTACTCCTCAGAATATGCATTATATGGGATATCAACAAAACATGATTTCACCTAGGCAACCTAACTCACAGCAGATTCAGCCGAACATGCACCCATCTGGGCAACCGAACCCCCAGCAGAATCAGCATAATATACATAACCAGCCTTTTGAAAATCAACAAGATTTTAAACCAGCAATGCCGAAGATGGAGGAAGCAGAGTTTAAAAATGGAAGCCAAGTTGGTTTCTCACCGTCACAGTATCCACAAAGGAGTGGCTTGCCTGTTCAAAACAACCAAAACATTCCTGCTGAAGTTAGTTCCGGTCAGGGGCCTAATGCAGGTGTCAATGCTGGCCAACCACAACAGTTTAGGGGCTTTTCAGGCGGCATACAACAGCCTACCCCGACAATGCAGTCACAGCAGGGTGGTTCTGATTTATTTTACCAACATGGTCCTAACTTTCAGAACCAGATGAGTCCAGGAATGATGCATGGTCATCCATCCAATGTGCATCCTGTTGCACAAAAGATGGGACACGAGGACAATGTACATGGTAGAGGTGGAAATGACTATTATTATAATTCTAATAAAGAGATGCCGCCAATGGGTCGTCAGCAGCCAGATATGACCCAAATGCCGATTCCCAGAAATCCGCAGGATATGAGGATTGGCAATTCCCCTTTTCAAAATAATGTCCCCAGTGGAAATGGAAGTGGTATTACTGGGAATGCTATGAGTAACATGTTCACTCCTCCAATAGGAGGACCTTCTGCTCTTTCAAGTAACTCTTTTACGAGGCCTCCTTATGGTGGATCTTCGGATGTTACTGATCTCTCAGCAGCTGAATTATACTGTCAGCAACATGAAGTTACAGCATCGGGTGACAACATTCCACCCCCATTCATGACATTTGATTCTACCGGGTTCCCTCCAGAGATATTGCAAGAGGTGTGTTCAGCGGGCTTCTCAAATCCAACACCAATACAGGCTCAAACATGGCCTATTGCTCTACAAGGTAGAGACATAGTGGCAATTGCCAAAACAGGTTCTGGAAAAACACTAGGCTACTTAATGCCAGCCTTCATTCTTCTTAGGCAGCGACGCAATAATTCTCTGAATGGCCCGACCGTTTTGGTTTTGGCTCCAACACGTGAACTTGCAACACAGATCCAAGAGGAGGTCTTCAAATTTGCACGGTCTTCAAGAGTATCTTGCACGTGCTTGTATGGTGGAGCGCCTAAAGCCCTTCAGCTAAAAGAGTTAGATCGGGGGGCAGACATTGTTGTTGCCACGCCTGGCAGGCTCAATGATATACTTGAAATGAAAAAAATTGACTTTGGGCAAGTTTCACTCCTTGTGCTTGATGAGGCTGACCGGATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATTCCACCACGTAGACAAACTCTCATGTATACTGCAACCTGGCCAAAAGAAGTTAGAAAAATTGCAGGCGATCTTCTTGTAAATCCTGTTCAAGTTAACATTGGAAATGTAGATGAGCTTGCTGCAAATAAATCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAACGGCGTCTAGAGCAGATCCTCAGATCCCAGGAACGGGGTTCTAAGATCATAATATTTTGTTCCACAAAGAAGTTATGTGATCAGCTTGCCCGTAGTATTGGCCGAACTTTTGGGGCTGCTGCAATTCACGGTGATAAGTCTCAAGGTGAGAGAGACTGGGTTTTAGGCCAATTCCGGACTGGGAAGTCTCCAATTTTGGTTGCCACCGATGTTGCTGCTCGTGGTCTTGATATTAAGGACATAAGGGTGGTGATCAACTATGATTTCCCCAATGGTGTTGAGGACTATGTACATCGAATTGGAAGAACTGGAAGGGCAGGTGCTACTGGAATGGCATATACCTTTTTCTCTGAGCAAGATTGGAAACATGCAGGTGATTTAATCAAAGTTTTGGAGGGTGCTAACCAGCATGTGCTTCCAGAGTTAAGACAGATTGCTTCACGTGGGCCACCAAGCTTTGGAAAGGATAGGGGCGGGATGAATCGGTTTGACTCTGGTGGTGGCGGTGGGCGCTGGGAGACTGGTGGTCGTGGCGGCATGAGGGACAGTGGTTTTGGTGGTCGTGGTGGCATGAGGGACGGTGGTGGTATGAGGGATGGTGGTGGTTTTGGTGGTCGTGGCGGCATGAGGGATGGTGGTGGCTTTGGTGGTCGTGGGGGCATGAGGGATGGTGGCTTTGGTGGTCGCGGTGGAATAAGGGATGGAGGTGGTGGAAGTGGTGGGAGGGGTGATTTCTTTCCTGGTAGGGGCAACAGAGGTAGAGGATTTGACGCTCCACGTGGGGGCAATGTTGGTTGGGGTAGGGGTGACCGTGGTGGTCCAGGTGATAGGTATAATATGGATGGTCGTGGACAAGGGCGTGGACGTGGACGATTTGACAACAGAAGAGATGTTCAGAGAAGTAGAGACAGAAGTTACAGTCGTAGCCCTGATAGAGTTCGAACATGGGATATCAACAGAAGCAGCAGCAGAAGTAGAAGTAGAAGTAGGAGTAGGAGCTGGAGCAGGGGTCGCAGTAGAAGTCGCAGCTGGTCTCGTGGTCGCAGCTATAGCCGTAGTCGCAGTCCACGCAGTCGTAGCCGTGGTCGCAGTTATAGTCGAAGCCGCAGCCCCAAGAAAACTAGGCGTGTTAAGTCGAAATTTTCTGATACAAATGATGCCGTGCCACCTGAAGCAGGAGCTTCCGATCCTAAAATGTTCCCCATACCTGCCAACACCCAAGGGAATTCTGTTACGGGAACAGAACATGTGGAACAGCTACCTGGCACAGGCCCAACTAACCCAGAGGCTGTAGTGGATGTTAGTCATCAACCAGCTTCTGATATTTGA 3501 0.4881 MTTTEAAGPRYAPDDPTLPTPWKGLIDGSTGLLYYWNPETNVTQYEKPGPVNPPAPAASTPSLAPIPVAHSVQQQHGQGQQMMQVQQPSQQQQGGHYGQGMPQQQSPHVAQAATQQQSSQAAQPVQPQPVQQPGLHQGRLQMMQPQGQQMMQYQGQQQYQQMHHQMPPQAIPRPQQFGQGNSQDHGSQLVQPQAPQFTPQNMHYMGYQQNMISPRQPNSQQIQPNMHPSGQPNPQQNQHNIHNQPFENQQDFKPAMPKMEEAEFKNGSQVGFSPSQYPQRSGLPVQNNQNIPAEVSSGQGPNAGVNAGQPQQFRGFSGGIQQPTPTMQSQQGGSDLFYQHGPNFQNQMSPGMMHGHPSNVHPVAQKMGHEDNVHGRGGNDYYYNSNKEMPPMGRQQPDMTQMPIPRNPQDMRIGNSPFQNNVPSGNGSGITGNAMSNMFTPPIGGPSALSSNSFTRPPYGGSSDVTDLSAAELYCQQHEVTASGDNIPPPFMTFDSTGFPPEILQEVCSAGFSNPTPIQAQTWPIALQGRDIVAIAKTGSGKTLGYLMPAFILLRQRRNNSLNGPTVLVLAPTRELATQIQEEVFKFARSSRVSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKSITQYVEVVPQMEKQRRLEQILRSQERGSKIIIFCSTKKLCDQLARSIGRTFGAAAIHGDKSQGERDWVLGQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPNGVEDYVHRIGRTGRAGATGMAYTFFSEQDWKHAGDLIKVLEGANQHVLPELRQIASRGPPSFGKDRGGMNRFDSGGGGGRWETGGRGGMRDSGFGGRGGMRDGGGMRDGGGFGGRGGMRDGGGFGGRGGMRDGGFGGRGGIRDGGGGSGGRGDFFPGRGNRGRGFDAPRGGNVGWGRGDRGGPGDRYNMDGRGQGRGRGRFDNRRDVQRSRDRSYSRSPDRVRTWDINRSSSRSRSRSRSRSWSRGRSRSRSWSRGRSYSRSRSPRSRSRGRSYSRSRSPKKTRRVKSKFSDTNDAVPPEAGASDPKMFPIPANTQGNSVTGTEHVEQLPGTGPTNPEAVVDVSHQPASDI 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo6g01295 1166 SMART ultradead3 511 714 IPR014001 -
Mepo6g01295 1166 FunFam probable ATP-dependent RNA helicase DDX17 459 700 - -
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 42 191 - -
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 1 24 - -
Mepo6g01295 1166 FunFam ATP-dependent RNA helicase RhlB 701 873 - -
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 1049 1100 - -
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 268 304 - -
Mepo6g01295 1166 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 492 520 IPR014014 GO:0003724
Mepo6g01295 1166 ProSiteProfiles WW/rsp5/WWP domain profile. 16 50 IPR001202 GO:0005515
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 998 1048 - -
Mepo6g01295 1166 Pfam DEAD/DEAH box helicase 516 686 IPR011545 GO:0003676|GO:0005524
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 870 1166 - -
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 66 165 - -
Mepo6g01295 1166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 523 697 IPR014001 -
Mepo6g01295 1166 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 460 870 - -
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 212 242 - -
Mepo6g01295 1166 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 643 651 IPR000629 -
Mepo6g01295 1166 Gene3D - 467 701 IPR027417 -
Mepo6g01295 1166 Pfam Helicase conserved C-terminal domain 723 831 IPR001650 -
Mepo6g01295 1166 CDD WW 19 48 IPR001202 GO:0005515
Mepo6g01295 1166 SMART ww_5 17 50 IPR001202 GO:0005515
Mepo6g01295 1166 SMART helicmild6 751 831 IPR001650 -
Mepo6g01295 1166 SUPERFAMILY WW domain 10 49 IPR036020 GO:0005515
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 172 191 - -
Mepo6g01295 1166 CDD SF2_C_DEAD 711 840 - -
Mepo6g01295 1166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 726 870 IPR001650 -
Mepo6g01295 1166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 846 IPR027417 -
Mepo6g01295 1166 MobiDBLite consensus disorder prediction 1126 1145 - -
Mepo6g01295 1166 ProSitePatterns WW/rsp5/WWP domain signature. 22 48 IPR001202 GO:0005515
Mepo6g01295 1166 Pfam WW domain 18 48 IPR001202 GO:0005515
Mepo6g01295 1166 Gene3D - 702 872 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo6g01295 Mepo-Chr6 14095999 14103401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo6g01295 490 851 Eukaryotic Initiation Factors Gene Family AT3G19760 33.609 5.52e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo6g01295 K12823 - gmx:100807830 1322.38